Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,256,787 | A→T | 6.9% | L55Q (CTG→CAG) | PP_3729 ← | amino acid‑binding protein‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,256,787 | 0 | A | T | 6.9% | 180.6 / 4.5 | 59 | L55Q (CTG→CAG) | PP_3729 | amino acid‑binding protein‑like protein |
Reads supporting (aligned to +/- strand): ref base A (32/22); new base T (2/2); total (34/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.49e-01 |
CCGTGGAAAAACGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAGGCCAGCGCCAACTGCCA > NC_002947/4256644‑4256935 | ccGTGGAAAAACGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTcgc < 2:910153/150‑1 (MQ=255) cGTGGAAAAACGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACACCGTTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTcgcg > 1:290317/1‑150 (MQ=255) gAAAAACGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGcacc < 2:659169/150‑1 (MQ=255) aaaaaCGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCAT‑‑GCGCGAACTGTTCgcgcgcatgg < 2:1107624/150‑7 (MQ=255) gCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTgg > 1:285474/1‑150 (MQ=255) cATCCGCTGCCCACGTTTCTTGTTTTTGTTTGCCTGGACCATTTTCACCCTCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCCGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACggaaag < 1:588217/150‑5 (MQ=255) aTACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTgggg < 2:828404/150‑1 (MQ=255) gCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCa < 2:903978/150‑1 (MQ=255) gTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGGGGGGGCCAGGCCGCGCACCTg > 1:212798/1‑150 (MQ=255) gCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATg > 1:1075819/1‑150 (MQ=255) gCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCACATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATg > 1:875968/1‑150 (MQ=255) gCTGTTGTACGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCGATCAGGCAGCGCTTCCAGTTGCCCAGCCCCACGGTTTGCACCCCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGTTTGGGGCCGGGCCGCGCACCTGATg > 1:392762/1‑150 (MQ=255) ttgtAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCTCGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCg > 1:78652/1‑150 (MQ=255) ttgtAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCg > 2:825896/1‑150 (MQ=255) tAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCg > 1:309855/1‑150 (MQ=255) gCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTc > 1:603993/1‑150 (MQ=255) gCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTc > 1:667433/1‑150 (MQ=255) gACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTggggg > 1:494462/1‑116 (MQ=255) gACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTggggg < 2:494462/116‑1 (MQ=255) gACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGa > 2:40133/1‑150 (MQ=255) ccACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTAGCTCCAGGaaa > 1:308157/1‑150 (MQ=255) cACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCgg > 2:6544/1‑150 (MQ=255) cACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCgg > 2:6111/1‑150 (MQ=255) cACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCgg < 2:309855/150‑1 (MQ=255) aCCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGTGCGCGAACTGTTCgcgc > 1:1106009/1‑93 (MQ=255) aCCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGTGCGCGAACTGTTCgcgc < 2:1106009/93‑1 (MQ=255) ccgcccgGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTa > 1:858516/1‑150 (MQ=255) ccgcccgGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTa > 2:28453/1‑150 (MQ=255) ccgGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCACATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACAcc < 2:875968/150‑1 (MQ=255) ggcggcggcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCgg < 1:6544/150‑1 (MQ=255) ggcggcggcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCgg < 1:6111/150‑1 (MQ=255) gcggcggcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCggg < 2:448078/150‑1 (MQ=255) ggcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTc > 1:118656/1‑150 (MQ=255) gcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCAc > 2:767018/1‑104 (MQ=255) gcATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCAc < 1:767018/104‑1 (MQ=255) atccatcAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTgg < 2:777954/86‑1 (MQ=255) atccatcAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTgg > 1:777954/1‑86 (MQ=255) atcAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAg < 2:285474/150‑1 (MQ=255) ggCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCa > 2:415985/1‑150 (MQ=255) aGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCg > 1:732280/1‑150 (MQ=255) ttCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGcc > 1:655838/1‑95 (MQ=255) ttCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGcc < 2:655838/95‑1 (MQ=255) cAGTTGCCCAGCACCCCGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTcactg < 2:58442/150‑1 (MQ=255) aGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTcactgg > 1:998470/1‑150 (MQ=255) gTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTcactggc > 2:164597/1‑150 (MQ=255) tcggccAGCACCGCGGTTTCCCCCTCGGAGCCCATGCGCGCGAACCGGTCGCGCACCACGGTGGGGGCCAGGGCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGGCGCAGTAGCGCACCGGCTcactggca < 2:392762/146‑1 (MQ=255) ccAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTcactggcactgg > 2:877902/1‑150 (MQ=255) ccAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTcactggcactgg < 1:28453/150‑1 (MQ=255) aGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCg > 2:537551/1‑150 (MQ=255) cacGGTTCGCACCTCGTAGCCTATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAg > 2:515440/1‑150 (MQ=255) cGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAggg < 2:1075819/150‑1 (MQ=255) tttGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTgg < 1:610712/150‑1 (MQ=255) tttGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTgg < 1:40133/150‑1 (MQ=255) tCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTc > 2:107116/1‑150 (MQ=255) gTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCaa > 2:529427/1‑150 (MQ=255) tAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAg < 2:667433/150‑1 (MQ=255) gtgcgcgAACTGTTCGCGCGCCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAGGCCAgcgc > 1:437152/3‑150 (MQ=255) aaCAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAGGCCAGCGCCAACTGc > 1:814255/1‑150 (MQ=255) cAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAGGCCAGCGCCAACTGCCa < 2:212798/150‑1 (MQ=255) | CCGTGGAAAAACGCATACGCTGGTCACGTTGGTCGCTGTTGTAGGCCAGGACCACGTCCACCCGCCCGGCGGCGGCATCCATCAGGCAGCGCTTCCAGTTGCCCAGCACCACGGTTTGCACCTCGTAGCCCATGCGCGCGAACAGTTCGCGCACCACGGTGGGGGCCAGGCCGCGCACCTGATGGCCGTCGCTCCAGGAAATGGGCGGGTACACCGGGTAGTCGCAGTAGCGCACCGGCTCACTGGCACTGGCGTGCAGGGTGGGCAACGTCAAGGCCAGCGCCAACTGCCA > NC_002947/4256644‑4256935 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |