Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 4,338,448 G→A 8.9% intergenic (+24/+118) PP_3812 → / ← PP_5632 lipase/allo‑isoleucine metabolism protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029474,338,4480GA 8.9% 122.8 / 3.3 45intergenic (+24/+118)PP_3812/PP_5632lipase/allo‑isoleucine metabolism protein
Reads supporting (aligned to +/- strand):  ref base G (22/19);  new base A (2/2);  total (24/21)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.48e-01

CGCTACAACGGAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCAAACCCTTCCACAATGAT  >  NC_002947/4338311‑4338592
                                                                                                                                         |                                                                                                                                                
cgcTACAACGGAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCtttt                                                                                                                                      <  1:65864/150‑1 (MQ=255)
  cTACAACGGAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGCCGTTTGc                                                                                                                                    >  2:733333/1‑150 (MQ=255)
      aaCGGAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGACGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCt                                                                                                                                >  1:1049138/1‑150 (MQ=255)
         ggAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTAtt                                                                                                                             <  1:477908/150‑1 (MQ=255)
                ttCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCACCGCACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGaa                                                                                                                      >  2:89467/1‑150 (MQ=255)
                 tCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGaaa                                                                                                                     >  1:987236/1‑150 (MQ=255)
                   aTGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACa                                                                                                                   >  1:697376/1‑150 (MQ=255)
                          tGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGTCCCGCCTGGGCGGGTCTGTTGCGTCGGTTTGCGGAAACAGGCCGcg                                                                                                            >  2:1082214/1‑149 (MQ=255)
                             gctgctCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCttt                                                                                                                                       >  2:839389/1‑120 (MQ=255)
                             gctgctCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCttt                                                                                                                                       <  1:839389/120‑1 (MQ=255)
                                  tCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGGGATGAGCAATAGATCCGCCTGGGCgg                                                                                                                                             >  2:607215/1‑109 (MQ=255)
                                  tCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCgg                                                                                                                                             <  1:607215/109‑1 (MQ=255)
                                         gTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTGGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCt                                                                                             >  1:916809/1‑150 (MQ=255)
                                                cAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCg                                                                                      >  2:395381/1‑150 (MQ=255)
                                                    tGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGc                                                                                  <  1:728043/150‑1 (MQ=255)
                                                      ccGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCgg                                                                                <  1:89467/150‑1 (MQ=255)
                                                        ggCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCa                                                                              >  1:117834/1‑150 (MQ=255)
                                                             tAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTcc                                                                         <  1:1004458/150‑1 (MQ=255)
                                                                aGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGc                                                                      >  1:635307/1‑150 (MQ=255)
                                                                          gCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCgg                                                            <  2:1100379/150‑1 (MQ=255)
                                                                             gCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAAc                                                                                                                    <  1:537015/91‑1 (MQ=255)
                                                                             gCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAAc                                                                                                                    >  2:537015/1‑91 (MQ=255)
                                                                                    ggCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCcgc                                                  <  2:279905/150‑1 (MQ=255)
                                                                                       aaCGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGaa                                               >  1:876286/1‑150 (MQ=255)
                                                                                        aCGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGCCCCGCCTGGGCGGGTCTTTTGCTTCTACTTGCGCAAACACCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGaaa                                              <  2:50543/150‑1 (MQ=255)
                                                                                         cGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTGTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTTTACCCGCGAAAg                                             <  1:435222/150‑1 (MQ=255)
                                                                                          gAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCCAGGCGGGTCtat                                                                                                                                       <  2:1055985/59‑3 (MQ=25)
                                                                                          gAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCCAGGCGGGTCtat                                                                                                                                       >  1:1055985/1‑57 (MQ=25)
                                                                                                   gTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGCAAGGGCCGTCaaa                                   >  1:125302/1‑150 (MQ=255)
                                                                                                        tCTGCAGGGAGGCGATGGGCAATAGCCCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAAGCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTg                              <  1:22904/150‑1 (MQ=255)
                                                                                                           gCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCtttt                                                                                                                                      <  1:483829/43‑1 (MQ=255)
                                                                                                           gCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCtttt                                                                                                                                      >  2:483829/1‑43 (MQ=255)
                                                                                                             aGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCAGCAGGCTTCAATGAATCTGCCAGCgg                                                                                     <  2:361514/90‑1 (MQ=255)
                                                                                                             aGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCAGCAGGCTTCAATGAATCTGCCAGCgg                                                                                     >  1:361514/1‑90 (MQ=255)
                                                                                                               tGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAggg                       <  1:395381/150‑1 (MQ=255)
                                                                                                                 aGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCt                     >  1:1054676/1‑150 (MQ=255)
                                                                                                                   gCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCa                   >  2:304318/1‑150 (MQ=255)
                                                                                                                   gCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCa                   >  2:1110215/1‑150 (MQ=255)
                                                                                                                           cAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCAAACCCTTc           <  2:117834/150‑1 (MQ=255)
                                                                                                                             aTAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCTGAAACATCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCAAACCCTTCca         >  1:25197/1‑150 (MQ=255)
                                                                                                                                 aCCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCg                                                                                      <  2:155257/69‑1 (MQ=255)
                                                                                                                                 aCCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCg                                                                                      >  1:155257/1‑69 (MQ=255)
                                                                                                                                 aCCCGCCCAGGCGGGTCTATTGCTTCTATTTGCGGAAACAGCCCGc                                                                                                             <  1:731130/46‑1 (MQ=18)
                                                                                                                                 aCCCGCCCAGGCGGGTCTATTGCTTCTATTTGCGGAAACAGCCCGc                                                                                                             >  2:731130/1‑46 (MQ=18)
                                                                                                                                    ggCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAACCAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCAAACCCTTCCACAATGAt  <  2:916809/149‑1 (MQ=255)
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CGCTACAACGGAATGATTCATGACTATGGGCTGCTCAACCCGTTGAGCCAAGTGCCGGCAGTAAAGGCGGCGCTGCGGCAGGCGGGCAACGAACTTAAAGTGCATCTGCAGTGAGGCGATGAGCAATAGACCCGCCTGGGCGGGTCTTTTGCTTCTATTTGCGGAAACAGCCCGCAGGCTTCAATGAATCTGCCAGCGGTGCGGCAGGTCCGGCCCTTTCGCGGGTAAACCCGCGAAAGGGCCGGCAAATCCTGCTCAGGGCTCAAACCCTTCCACAATGAT  >  NC_002947/4338311‑4338592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: