Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,370,069 | T→A | 7.8% | E54D (GAA→GAT) | ramA ← | (R)‑stereoselective amidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,370,069 | 0 | T | A | 7.8% | 156.0 / 4.2 | 51 | E54D (GAA→GAT) | ramA | (R)‑stereoselective amidase |
Reads supporting (aligned to +/- strand): ref base T (28/19); new base A (2/2); total (30/21) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.87e-01 |
TCCCTTGCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATCGCGACCGGAGAGTTG > NC_002947/4369927‑4370212 | tCCCTTGCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTTAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGa < 2:1063272/150‑1 (MQ=255) ccTTGCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATAACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGc > 2:394979/1‑150 (MQ=255) cTTGCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCt > 1:564162/1‑150 (MQ=255) gCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGTCTTTTTCTGCTAGCTGtt < 2:160578/150‑1 (MQ=255) gggggggACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTGGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTg < 2:188810/149‑1 (MQ=255) ggggTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTgg < 1:288747/150‑1 (MQ=255) cAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTggg > 1:13612/1‑143 (MQ=255) cAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTggg < 2:13612/143‑1 (MQ=255) aGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCa > 1:554136/1‑150 (MQ=255) aaCGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGt < 2:330569/150‑1 (MQ=255) ccGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTggg > 1:304216/1‑150 (MQ=255) tCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATc > 1:700170/1‑150 (MQ=255) gTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATcag > 2:748625/1‑150 (MQ=255) ttCTCAGCCAGACCAATCACCGCTGCGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTCAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCCGCTGGGTCTCTGGGAAAATcagc < 2:554136/150‑1 (MQ=255) tcAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGa > 2:736115/1‑150 (MQ=255) gCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTc < 1:361363/89‑1 (MQ=255) gCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTc > 2:361363/1‑89 (MQ=255) aCCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCCGACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATc < 2:579305/150‑1 (MQ=255) cAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCa > 1:463658/1‑150 (MQ=255) cAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCa < 1:1022091/150‑1 (MQ=255) aaTCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCGGGGTCTCTGGGAAAATCAGCAGAGCGGTATCCaa > 2:2473/1‑149 (MQ=255) aTCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGCCGAAATCGCCGAGc > 2:500079/1‑87 (MQ=255) aTCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGCCGAAATCGCCGAGc < 1:500079/87‑1 (MQ=255) cACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGgc > 2:501825/1‑150 (MQ=255) aCCGCTGAGACGTTTCGTTCGTGTCAGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGgcg > 1:704695/1‑150 (MQ=255) cGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGAGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCa > 1:782631/1‑150 (MQ=255) gCTGAGACGTTTCGGTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAg < 2:20563/150‑1 (MQ=255) gagaCGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTgg < 2:383320/91‑1 (MQ=255) gagaCGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTgg > 1:383320/1‑91 (MQ=255) tttCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTa < 1:686050/144‑1 (MQ=255) tttCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTa > 2:686050/1‑144 (MQ=255) tttCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATg < 2:463658/150‑1 (MQ=255) tttCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATg > 2:925696/1‑150 (MQ=255) gttcgtGTACGGCGCGTTGCACGGCCTGGACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAGAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCt > 1:18134/1‑150 (MQ=255) gtgtACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGAAACAGCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCaa > 1:1039919/1‑150 (MQ=255) gTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCa < 2:564162/150‑1 (MQ=255) gTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCa > 1:902604/1‑150 (MQ=255) cGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTtat > 1:841289/1‑150 (MQ=255) ccTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAg > 1:295556/1‑150 (MQ=255) tGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCg < 1:501825/150‑1 (MQ=255) acTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATc < 2:782631/150‑1 (MQ=255) gCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCAt > 2:166302/1‑150 (MQ=255) ccGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATcg > 1:387734/1‑150 (MQ=255) gTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATcgcg > 1:553391/1‑150 (MQ=255) gCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATCGCGACCGgaga > 2:566896/1‑150 (MQ=255) tCGGCGATATCGGCGAGCTGTTGGGCGCTGGCAAATCCCATc < 1:703297/42‑1 (MQ=255) tCGGCGATATCGGCGAGCTGTTGGGCGCTGGCAAATCCCATc > 2:703297/1‑42 (MQ=255) cGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCACTGTACGTTCCAGGTTATAAGCgg < 2:556027/126‑1 (MQ=255) cGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCgg > 1:556027/1‑126 (MQ=255) ggCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATCGCGACCGGAGAGTTg > 2:224888/1‑150 (MQ=255) ggCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATCGCGACCGGAGAGTTg < 1:166302/150‑1 (MQ=255) | TCCCTTGCGGGGTGACCAGCAAGGAGGTGTTGTAAACGGTGCCGGAGTCGTTCTCAGCCAGACCAATCACCGCTGAGACGTTTCGTTCGTGTACGGCGCGTTGCACGGCCTGCACACTCGGCCCGTTAACGGGCTCGGCGATTTCGGCGAGCTGTTGGGCGCTGGCAAATCCCATCAGCTGGGTCTCTGGGAAAATCAGCAGATCGGTATCCACGGCGCAGGTAGCGATGGCCTGCAATGTACGTTCCAGGTTATAAGCGGTATCGCCATCGCGACCGGAGAGTTG > NC_002947/4369927‑4370212 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |