Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 399,532 | C→T | 7.5% | V19M (GTG→ATG) ‡ | PP_0332 ← | acyltransferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 399,532 | 0 | C | T | 7.5% | 151.9 / 2.1 | 54 | V19M (GTG→ATG) ‡ | PP_0332 | acyltransferase |
Reads supporting (aligned to +/- strand): ref base C (22/27); new base T (2/2); total (25/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 |
GGTAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACAAA > NC_002947/399383‑399679 | ggTAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCAc < 1:934722/150‑1 (MQ=255) tAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGAGCAGCTCAGCAGCGGGCAGATCAATACCACgg > 1:649/1‑150 (MQ=255) gCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGag < 1:1066241/150‑1 (MQ=255) acaGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCGTGGTATTGatct < 1:955465/150‑4 (MQ=255) caGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCGTGGTATTGatctg < 2:419929/150‑5 (MQ=255) gCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGagcagcagc > 2:448231/1‑150 (MQ=255) cGANGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAgcagcagca > 2:693861/1‑150 (MQ=255) gAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGagcagca < 1:153856/146‑1 (MQ=255) gAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGagcagca > 2:153856/1‑146 (MQ=255) aaGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAgg < 2:837645/150‑1 (MQ=255) aTGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTCTTGCGCAGCGGCACggtt < 2:103321/150‑2 (MQ=255) aTGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGggtg < 1:693861/150‑1 (MQ=255) aTGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGggtg < 1:794821/150‑1 (MQ=255) tGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGggtgg < 1:859156/150‑1 (MQ=255) gCTTTGTCGATTTCCGACCAGGTTTCGGCCTCCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGGGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTa < 2:596865/150‑1 (MQ=255) tCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTgaga > 2:816522/1‑150 (MQ=255) gATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGggt > 1:449379/1‑138 (MQ=255) gATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGggt < 2:449379/138‑1 (MQ=255) ttCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATATCGCGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGcc > 1:57565/1‑150 (MQ=255) ttCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGcc < 2:863909/150‑1 (MQ=255) gCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGc > 1:651585/1‑150 (MQ=255) acccacATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATa > 1:743134/1‑150 (MQ=255) ccacATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACGAGGAGAGTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATaaa > 1:11595/1‑150 (MQ=255) ccacATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATaaa > 2:520449/1‑150 (MQ=255) cacaTCACCTCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGAAGTTCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAag < 1:629630/150‑1 (MQ=255) acaTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCGGGTCAGCAGGCGACGCATAAaga > 1:298381/1‑150 (MQ=255) acaTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAaga > 2:363158/1‑150 (MQ=255) acaTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCAGGTCAGCAGGCGACGCATAAaga > 1:298208/1‑150 (MQ=255) acaTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGCGCACTCCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAaga > 1:1040363/1‑150 (MQ=255) aTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAgaga < 1:363158/150‑1 (MQ=255) aTCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAgaga < 1:520449/150‑1 (MQ=255) ccGCCCCCGACGCGTAGTCGCGGCCACGGCCAGGCAACACCGTCGTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGActct > 2:739576/1‑150 (MQ=255) cACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCttgttg < 2:57565/150‑1 (MQ=255) gTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATaaa < 2:952204/150‑1 (MQ=255) ggCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGATTCTTGTTGTGGGAGATAAACGGtt < 1:705481/150‑1 (MQ=255) aaCACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCa > 2:140930/1‑150 (MQ=255) acacCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAg > 2:92585/1‑150 (MQ=255) acacCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAg < 1:92585/150‑1 (MQ=255) acacCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAg < 1:610863/150‑1 (MQ=255) ccAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGc > 1:605466/1‑150 (MQ=255) cAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGagca > 2:197343/1‑56 (MQ=255) cAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGagca < 1:197343/56‑1 (MQ=255) cAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCACTGATAAGAAGGGCg < 2:743134/150‑1 (MQ=255) cAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCg > 1:1088057/1‑150 (MQ=255) cTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTg < 2:914489/150‑1 (MQ=255) cAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTAc < 2:1040363/150‑1 (MQ=255) gAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTga > 1:322553/1‑59 (MQ=255) gAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTga < 2:322553/59‑1 (MQ=255) gAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCaaa < 1:448231/150‑1 (MQ=255) agcagcGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCaa < 2:27447/150‑1 (MQ=255) ctCAATACCGTGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGAcggcg > 1:835453/2‑150 (MQ=255) ctCAATACCGTGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGAcggcg > 1:904550/2‑150 (MQ=255) tCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGAcggcg < 1:752905/149‑1 (MQ=255) tCAATACCACGGTATTGAGCAGCACCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGAcggcg > 2:752905/1‑149 (MQ=255) cACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACaaa < 1:816522/150‑1 (MQ=255) | GGTAGGGATGCACAGGGCGAAGATGGCTTTGTCGATTTCCGACCAGGTTTCGGCCACCCACATCACCGCCCACGACGCGTAGTCGCGGCCACGGCCTGGCAACACCAGCTTGAGCAGGGCGAAGACCAGCAGCGGGCAGATCAATACCACGGTATTGAGCAGCAGCAGGGTGGTAGTGAGAATGCCGGTCAGCAGGCGACGCATAAAGAGACTCTTGTTGTGGGAGATAAACGGTTGGCAATGATAAGCAGGGCGGTGGCCTACGCCAAATGTCCAATGCCCGACGGCGGGGACAAA > NC_002947/399383‑399679 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |