Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 4,843,918 | C→A | 8.3% | L241M (CTG→ATG) ‡ | PP_4259 → | iron‑sulfur cluster‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 4,843,918 | 0 | C | A | 8.3% | 142.2 / 2.4 | 48 | L241M (CTG→ATG) ‡ | PP_4259 | iron‑sulfur cluster‑binding protein |
Reads supporting (aligned to +/- strand): ref base C (22/22); new base A (2/2); total (24/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 |
CAGGCCGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTGACGGCCT > NC_002947/4843777‑4844066 | cAGGCCGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCgtg > 1:652865/1‑150 (MQ=255) aGGCCGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCgtgt > 1:591871/1‑150 (MQ=255) gCCGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGATCAGCGTGTcc > 2:303603/1‑150 (MQ=255) ccGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGATCAGCGTGTCCt < 2:867270/150‑1 (MQ=255) gATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGATCAGCGTGTCCttg < 1:303603/150‑3 (MQ=255) tGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCa > 1:1060130/1‑150 (MQ=255) gggCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCAc > 1:937429/1‑150 (MQ=255) cTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCg > 1:848323/1‑150 (MQ=255) ttCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGc < 1:442737/150‑1 (MQ=255) tCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAAccc > 1:242892/1‑150 (MQ=255) gCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCcgcg < 2:389194/150‑1 (MQ=255) ttcttcGCCCTCGCCACTTACGGCAACGCCGGCTGGCTAAGCGAACGGGTGTGCGTGTACATGTGCCCCTATGTCCGCTTCCAGAGCGTGATTTTGGACAAGGACAAGCTGTTCGTGTCGTACGACCCACGCCGTGGCGAACCCCGCGGc > 1:416758/1‑150 (MQ=255) ttcttcACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGc > 2:404372/1‑150 (MQ=255) tcttcACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGCGTCCTACGACCCACGCCGTGGCGAAACCCGCGGcc < 2:591871/150‑1 (MQ=255) cTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCaag < 2:1060130/150‑1 (MQ=255) gCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGAGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCaagaaa < 1:1092577/150‑1 (MQ=255) aCTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGAt < 1:404372/150‑1 (MQ=255) aCTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGAt > 1:327106/1‑150 (MQ=255) ttACGGCAACGCCGGCTGGCTCCGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTCACAACGGTCAAGGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATAc < 1:748115/150‑1 (MQ=255) tACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATAcc < 2:191483/150‑1 (MQ=255) ggctACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAgg < 2:848323/150‑1 (MQ=255) ctACGCGAACAGGTGTGCGTGTACATGTGCCCCTAGTCTCGCTTGCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGAGGCCCGCGCAAGAGAGATACAGAGTACAAGGCCCAGGGc > 1:420916/1‑150 (MQ=37) aCGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCt < 2:327106/150‑1 (MQ=255) gAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGt < 2:937429/150‑1 (MQ=255) aaCAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATa > 2:602821/1‑123 (MQ=255) aaCAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATa < 1:602821/123‑1 (MQ=255) gtgCGTGTACATGTGCCCCTATGCCCGCTCCTAGTGCATTTTGTTCAACAAGGACTCGCTGATCGTGTCCTACGACCCGCGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACCAGGCCCAGGGCCTGGGTGACTGCAt < 2:420916/150‑1 (MQ=255) cGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGa > 1:769918/1‑150 (MQ=255) cGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGa < 1:565132/150‑1 (MQ=255) cTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATgtgcgt > 1:994388/1‑150 (MQ=255) gCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGTACGCGCAAGAAAGATACCATTTTTGATCCCCATTGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAg < 1:748944/150‑1 (MQ=37) cccGCTTCCAGAGCGTGATGGTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACGGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAgg > 1:562022/1‑150 (MQ=255) ccGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGt > 2:593577/1‑150 (MQ=255) ccGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGt > 2:484794/1‑150 (MQ=255) gagCGTGATGTTCGACAAGGACACGCTGATCGTGTACTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGGCTGCACCATGTGCGTGCAGGTCTGCCCGAc > 2:594310/1‑150 (MQ=255) gATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCGCGCGGAGACCAAACCGCCGTCCCGCTCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGTTCTGCCCGACCGGCAt < 2:242892/150‑1 (MQ=38) gATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTgg > 1:167121/1‑101 (MQ=255) gATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTgg < 2:167121/101‑1 (MQ=255) gATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCAt < 1:594620/150‑1 (MQ=255) tGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCg < 2:769918/150‑1 (MQ=255) aGGACACGATCAGCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTg > 1:874095/1‑150 (MQ=255) ggACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGAc < 2:762428/103‑1 (MQ=255) ggACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGAc > 1:762428/1‑103 (MQ=255) acacGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACACGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTGACg < 2:689708/150‑1 (MQ=255) gCTGATCGTGTCCTACGACCCACGGCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGACCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTGACGGCCt > 2:428133/1‑150 (MQ=255) gCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGc < 1:690592/121‑1 (MQ=255) gCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGc > 2:690592/1‑121 (MQ=255) gCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTGACGGCCt > 2:373869/1‑150 (MQ=255) | CAGGCCGATGGCTGGGCCTACTTCTGGGTCGGCTTCTTCACCCTCGCCACTTACGGCAACGCCGGCTGGCTACGCGAACAGGTGTGCGTGTACATGTGCCCCTATGCCCGCTTCCAGAGCGTGATGTTCGACAAGGACACGCTGATCGTGTCCTACGACCCACGCCGTGGCGAAACCCGCGGCCCGCGCAAGAAAGATACCGACTACAAGGCCCAGGGCCTGGGTGACTGCATCGACTGCACCATGTGCGTGCAGGTCTGCCCGACCGGCATCGACATCCGTGACGGCCT > NC_002947/4843777‑4844066 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |