Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 571,218 | G→C | 12.0% | V63L (GTT→CTT) | ssb → | single‑stranded DNA‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 571,218 | 0 | G | C | 12.0% | 160.6 / 11.8 | 56 | V63L (GTT→CTT) | ssb | single‑stranded DNA‑binding protein |
Reads supporting (aligned to +/- strand): ref base G (25/24); new base C (3/4); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.22e-01 |
CCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCAGCTGCTCG > NC_002947/571069‑571365 | ccTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAgg < 1:604418/150‑1 (MQ=255) cAGGATTCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGaa > 2:434088/1‑150 (MQ=255) aTCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCg > 2:1009510/1‑150 (MQ=255) ccGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGt‑t < 2:327966/137‑1 (MQ=255) ccGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGt‑t > 1:327966/1‑137 (MQ=255) ccGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTg > 2:300872/1‑150 (MQ=255) cGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTgg > 1:420118/1‑150 (MQ=255) cGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTgg > 1:305555/1‑150 (MQ=255) cGAAGTCCGCTACCTGCCCAACGGTAACGCCGTCACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGCGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTgg > 1:819885/1‑150 (MQ=255) tCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAAt < 2:916728/150‑1 (MQ=255) ccGCTACCTGCCCAACGGTACCGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCCTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATa < 1:893770/150‑1 (MQ=255) cGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATAc < 1:924882/150‑1 (MQ=255) ccTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTgcg > 2:1005425/1‑150 (MQ=255) ccAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAgg < 2:183/150‑1 (MQ=255) aaCGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGt > 1:126881/1‑150 (MQ=255) ggTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCAAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGaa < 2:499437/132‑1 (MQ=255) ggTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCAAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGaa > 1:499437/1‑132 (MQ=255) cGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCGATCATTCGAGAAGGGCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGcncgc < 2:705045/150‑5 (MQ=255) ccGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAACCT‑TGCCGaacagc < 1:304355/117‑5 (MQ=255) ccGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAACCT‑TGCCGaacagc > 2:304355/1‑113 (MQ=255) gACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGAAACGTGAGTCGCTGTTCGGAAGCCTGTGCCG‑TTTCTCGTGCGAATACCTGCGCAAGGGTTCGCAGTGCTACAt < 1:300872/150‑1 (MQ=255) ccAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCg < 1:439646/150‑1 (MQ=255) cAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATAACTGCGAAACGGTTCGCAAGGCTACATTGa > 1:19893/1‑150 (MQ=255) ccTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGGGCTACATCGAAgg > 2:112801/1‑150 (MQ=255) tGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCCCAGTGTGTAGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGc > 2:678471/1‑150 (MQ=255) gaccaGCTAGCTGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGAc > 2:856649/2‑150 (MQ=255) cGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGa < 1:1005425/150‑1 (MQ=255) gTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGa > 2:195924/1‑150 (MQ=255) gACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTgg < 1:1109345/145‑1 (MQ=255) gACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTgg > 2:1109345/1‑145 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTgg < 1:1081810/140‑1 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTgg > 2:1081810/1‑140 (MQ=255) aCAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACg > 1:1057602/1‑150 (MQ=255) aaGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGc < 1:856649/150‑1 (MQ=255) gCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTACAGACCCGCGAGTGGGAAAAAGACGGc > 1:398587/1‑148 (MQ=255) gCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTACAGACCCGCGAGTGGGAAAAAGACGGc < 2:398587/148‑1 (MQ=255) ggCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAgcgc < 1:434088/150‑1 (MQ=255) ccAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTa > 1:1005052/1‑150 (MQ=255) aaGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTAcacc < 2:305555/150‑1 (MQ=255) tCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATAc < 2:605859/65‑1 (MQ=255) tCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATAc > 1:605859/1‑65 (MQ=255) gAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCAtcgtc < 1:848909/150‑1 (MQ=255) tGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAATTTTTCTTCAACAATCGCTACACCACCGAGATCATCGTCGat < 2:158111/150‑1 (MQ=255) ggCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGata < 1:1009510/150‑1 (MQ=255) ccGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGc < 2:195683/83‑1 (MQ=255) ccGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGc > 1:195683/1‑83 (MQ=255) cGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAAc < 1:195924/150‑1 (MQ=255) tgtgtCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACgg > 2:1044293/1‑150 (MQ=255) gCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAACAGACGGCATCAAGCACGACACCACCGAGATCATCGTCGATATCAACGGCCCCag > 1:505113/1‑149 (MQ=255) gCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCAt > 1:382557/1‑150 (MQ=255) gatttCGGCAACCT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGa > 1:171567/4‑98 (MQ=255) gatttCGGCAACCT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGa < 2:171567/95‑1 (MQ=255) tttCGGCAACCT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGa > 1:454232/2‑96 (MQ=255) tttCGGCAACCT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGa < 2:454232/95‑1 (MQ=255) gTTCGGCAAGGT‑TGCCGAAATCGCTGGAGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAATTATTTGGCAACGAGCGCTCCACCACCGAGATCATCGTCGATATCAACGGCACCATGCa < 2:420118/150‑1 (MQ=255) aaGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCAGCTGCTc < 2:1005052/150‑1 (MQ=255) aGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCAGCTGCTcg < 2:1057602/150‑1 (MQ=255) | CCTGTGGCCAGGATCCCGAAGTCCGCTACCTGCCCAACGGTAACGCCGTGACCAACCTGAGCCTGGCCACCAGCGAGCAGTGGACTGACAAGCAGTCGGGCCAGAAGGTCGAGCGTACCGAGTGGCACCGTGTGTCGCTGTTCGGCAAGGT‑TGCCGAAATCGCTGGCGAATACCTGCGCAAGGGTTCGCAGTGCTACATCGAAGGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGCTACACCACCGAGATCATCGTCGATATCAACGGCACCATGCAGCTGCTCG > NC_002947/571069‑571365 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |