| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1734855 = | 68 (1.370) | 14 (0.310) | 11/242 | 3.2 | 17.2% | intergenic (+15/+98) | tcdA/PP_1528 | tRNA cyclic N6‑threonylcarbamoyladenosine(37) synthase TcdA/hypothetical protein |
| ? | NC_002947 | 1734939 = | 72 (1.580) | intergenic (+99/+14) | tcdA/PP_1528 | tRNA cyclic N6‑threonylcarbamoyladenosine(37) synthase TcdA/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCGCAGCAATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1735014‑1734855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgcgaagCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCGGCCAGCTCCTCACT > NC_002947/1734939‑1735087 CGCGCAGCAATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAG < 1:115378/150‑1CGCGCAGCAATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAG < 2:1097607/150‑1 CAATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGAGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCG > 1:861569/1‑150 ATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAA < 2:130357/150‑1 GCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTGCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAA < 2:597792/150‑1 GTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGAAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAG > 2:1056402/1‑150 GCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCG > 2:754623/1‑150 CCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCGGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAA > 1:445532/1‑150 CCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCA > 1:535825/1‑121 CCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCA < 2:535825/121‑1 CCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTG > 2:813521/1‑88 CCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTG < 1:813521/88‑1 CACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACAC > 1:1018413/1‑116 CACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACAC < 2:1018413/116‑1 ACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCGGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATT > 2:854261/1‑150 TACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAGAAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGC < 1:1056402/150‑1 GGAAGAGATGCAGTATCTGTGGGAGCGGGCGGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGG < 2:445532/150‑1 GTATCTGTGGGAGCGGGCGGGCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCG > 1:304957/1‑150 GCCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCGGCCAG < 1:380987/150‑1 CCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCG > 1:64562/1‑144 CCCGCGAAGCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCG < 2:64562/144‑1 GCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCGGCCAGCTCCTCACT < 1:754623/150‑1 CGCGCAGCAATGGGCTGCATGCGGTGTTGCAGCGGATGGCGGAGTTGGCGTCCAACCGCTGAATCGGCGCTGGTTGCTTCGCGGGCCCGCCCGCTCCCACAGGTACGGCATCATGCTTGGAAGAGATGCAGTATCTGTGGGAGCGGGCAGGCCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/1735014‑1734855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcccgcgaagCAACCAGCGCCGATTCAGCGGTTGGACGCCAACTCCGCCATCCGCTGCAACACCGCATGCAGCCCATTGCTGCGCGACGGCGACAATTGGCGCTCCAGCCCGAGCTGGGTAAACCACTCGCGCAGATCAATCCCGGCCAGCTCCTCACT > NC_002947/1734939‑1735087 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |