New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3947957 =	64 (1.290)	10 (0.260)	9/208	3.2	17.2%	coding (136/1797 nt)	PP_3483	type II secretion system protein
	?	NC_002947	3948042 =	46 (1.180)					coding (51/1797 nt)	PP_3483	type II secretion system protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGG  >  NC_002947/3947901‑3948191                                                                                                                                              |                                                                                                                                                      ttGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGc                                                                                                                                               >  1:878279/1‑150 (MQ=255)  tGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTGGGTGcg                                                                                                                                              <  2:316447/150‑2 (MQ=255)  tGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCa                                                                                                                                              <  2:1165914/150‑1 (MQ=255)         gggCGTGGGCCAGGTGGTCGGGGGGGTAGGGGGAAATTTTTGCGGGGTTCTTCGCGGGCATGCCCGCTGCCACAGGTACATCACAGGTCTGTGGGCTGCATTCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg                                                                                                                                       <  2:187398/150‑1 (MQ=255)             cTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGa                                                                                                                                   >  1:1111749/1‑150 (MQ=255)                  ccAGGGGGTCGCTGGGGTACGCGGAACTTTCTGCTGGTTTCTTCCCGGGCATGGCCGCGCCCACAGGTACATCACAGGTCTGTGGGCTGCTTACATCCTTTGCGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg                                                                                                                              <  1:423437/150‑1 (MQ=255)                   cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgg                                                                                                                             <  2:1075475/150‑1 (MQ=255)                   cAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTACCACAGGTGCATAACAGGTGTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGAtgggaa                                                                                                                             >  1:41078/1‑145 (MQ=255)                    aggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCggg                                                                                                                            <  2:1111749/150‑1 (MQ=255)                     ggaggTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCgggg                                                                                                                           >  2:1048794/1‑150 (MQ=255)                            gcgcGGGTAGGCAGAAATTTTTGCTGGGTTCTTCGCGCGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATGCATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                                                    <  1:228282/150‑1 (MQ=255)                            gcgGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg                                                                                                                                       <  2:761004/131‑1 (MQ=255)                            gcgGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTg                                                                                                                                       >  1:761004/1‑131 (MQ=255)                            gcgGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATAACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGc                                                                                                                                               >  2:626500/1‑123 (MQ=255)                            gcgGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCCCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGc                                                                                                                                               <  1:626500/123‑1 (MQ=255)                            ccgGGGATAGCCGGCATGTGTTGCTGGGGTCATCGTCGCCCTGCCCCTGGCCACGGGTATATCGGAGGTAGGTGGAATGCATACATCCGGTCGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATc                                                                                                                    <  1:325018/149‑1 (MQ=255)                                  gTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGc                                                                                                              <  1:1048794/150‑1 (MQ=255)                                      gCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTACCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCGTGGCCGCGAAGACGTCGGTGCAGGCTTTTCAGATTCCGGGCTTGCATCGACTGCGTCt                                                                                                          >  2:56151/1‑150 (MQ=38)                                        ggAAATTTTTCCCGGGTTCGTCGCGGGCATGCCCGCTCGACCAGGTGTAGCAGAGGTCTGTGGGATGCATTCCTCGTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTgg                                                                                                        <  1:953499/150‑1 (MQ=255)                                             tttttGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATgg                                                                                                   >  1:1092259/1‑150 (MQ=255)                                                     gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACTTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg                                                                                                                              <  1:126402/115‑1 (MQ=255)                                                     gggTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCg                                                                                                                              >  2:126402/1‑115 (MQ=255)                                                          cttcGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa                                                                                                                                     >  1:913384/1‑103 (MQ=255)                                                          cttcGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCa                                                                                                                                     <  2:913384/103‑1 (MQ=255)                                                                gggCATGCCCGCGCCCCCAGGTACATCACAGGTCTGTGGGCTTCATACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAggg                                                                                <  1:390971/150‑1 (MQ=255)                                                                    aTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                                                            <  2:653852/150‑1 (MQ=255)                                                                    aTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTACAGGCTTTGCAGATTCCGGGGGTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                                                            >  1:653852/1‑150 (MQ=255)                                                                    aTGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGATGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGgcgc                                                                            <  1:788586/150‑1 (MQ=255)                                                                      gcgcggtCCCAAAGGTACCTCGCAGGTCTGTGGGGTGCATACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGt                                                                          <  2:339572/144‑1 (MQ=255)                                                                            tCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAgg                                                                    >  2:920012/1‑150 (MQ=255)                                                                              ccACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAggtt                                                                  <  2:878279/150‑3 (MQ=255)                                                                                    gTACATCAAAGGTCTGTGGGCTGCATACTTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGGCTCCGCTCAGGGGCGTGTCGCAGGCTGGCTCg                                                            <  1:927870/150‑1 (MQ=255)                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATg                                                                                                               <  2:81162/94‑1 (MQ=255)                                                                                         tCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATg                                                                                                               >  1:81162/1‑94 (MQ=255)                                                                                                    tgGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGgcg                                            >  2:1153048/1‑150 (MQ=255)                                                                                                          ggaTACATCCGGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTa                                      <  2:569618/148‑1 (MQ=255)                                                                                                           cATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTAt                                     >  2:630242/1‑150 (MQ=255)                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGAGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                                                                                    <  2:538115/86‑1 (MQ=255)                                                                                                            aTACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGAGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATg                                                                                                    >  1:538115/1‑86 (MQ=255)                                                                                                             tACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTc                                   >  1:463816/1‑150 (MQ=255)                                                                                                                aTCCTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTcccc                                <  1:586298/150‑1 (MQ=255)                                                                                                                aTCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTcccc                                >  1:319323/1‑150 (MQ=255)                                                                                                                 tgcTGTGGGCGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt                               <  1:56151/148‑1 (MQ=255)                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc                                                 <  2:73101/132‑1 (MQ=255)                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGc                                                 >  1:73101/1‑132 (MQ=255)                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt                               <  2:672604/150‑1 (MQ=255)                                                                                                                 tCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCt                               <  2:1092259/150‑1 (MQ=255)                                                                                                                        ttcgCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCa                        >  2:1068929/4‑150 (MQ=255)                                                                                                                                  tGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGAtcgtc              <  1:307994/150‑1 (MQ=255)                                                                                                                                             aCGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCtg   <  1:630242/150‑1 (MQ=255)                                                                                                                                              cGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCtgg  <  1:1153048/150‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                      TTGCAGACGGGCCTGGGCCAGGAGGTCGCGGGGGTAGGCGGAAATTTTTGCTGGGTTCTTCGCGGGCATGCCCGCTCCCACAGGTACATCACAGGTCTGTGGGCTGCATACATCCTGTGGGAGCGGGCATGCCCGCGAAGACGTCGGTGCAGGCTTTGCAGATTCCGGGGTTGCATCGAATGCTTCTGGCATGGCCTGCGACTCCGCTCAGGGGCGCGTCGCAGGCTGGCTCGGCCAGGGGTGCGGGCGCCGCTATTCCCCTGTGAGCAGTTGATCGTCGTCGGGCCCTGG  >  NC_002947/3947901‑3948191

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.