New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 6006630 | 67 (0.500) | 34 (0.350) | 22/188 | 5.1 | 44.0% | intergenic (+42/+57) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator |
? | NC_002947 | = 6006642 | 38 (0.390) | intergenic (+54/+45) | ydcJ/PP_5261 | metalloprotein/LysR family transcriptional regulator | |||||
Rejected: Coverage evenness skew score above cutoff. |
GAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGC > NC_002947/6006481‑6006778 | gAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGt < 2:1351082/150‑1 (MQ=255) gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa < 1:2472793/150‑1 (MQ=255) gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa > 2:3168082/1‑150 (MQ=255) gcTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGAGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAgggta < 2:664824/150‑3 (MQ=255) gTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGAc < 1:195002/150‑1 (MQ=255) tGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCAAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCt < 1:880513/150‑1 (MQ=255) cAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt < 1:2564201/150‑1 (MQ=255) aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa < 1:1191761/139‑1 (MQ=255) aGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCa > 2:1191761/1‑139 (MQ=255) ggTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg < 2:500493/150‑1 (MQ=255) tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAggg < 2:1363360/134‑1 (MQ=255) tACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAggg > 1:1363360/1‑134 (MQ=255) ggATGAGCTGGCGCGATATGCGCAAAGCGAGCGACGGTCGCTGCCGGCCTGTGCACAGGCGTTGATCCTGGGTTCGATGTAAATCTATACCGGCAACTTCGCGGGCTCGCCCGCTCCCACAGATACAGGGCATACGACCTGTGGGAGCgg < 2:1670679/150‑1 (MQ=255) gATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg > 1:1951740/1‑142 (MQ=255) gATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgtg < 2:1951740/142‑1 (MQ=255) gATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCggg > 2:3218953/1‑150 (MQ=255) aTGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGc < 1:3168082/150‑1 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa < 1:2304876/150‑1 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa < 1:3218953/150‑1 (MQ=255) gAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGCCGTTGAACCTGTGTTCGATGTATCACTGTACCGGCCTCTTCACGCACTGGGACTCTTCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa < 1:2606892/150‑1 (MQ=255) cgcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGcc > 1:1741962/1‑137 (MQ=255) cgcAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGcc < 2:1741962/137‑1 (MQ=255) aaaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt < 2:410397/119‑1 (MQ=255) aaaGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCtgt > 1:410397/1‑119 (MQ=255) gcCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg > 1:2807541/1‑96 (MQ=255) gcCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAg < 2:2807541/96‑1 (MQ=255) ccGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa > 1:431946/1‑121 (MQ=255) ccGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGa < 2:431946/121‑1 (MQ=255) cTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCg < 1:1560664/86‑1 (MQ=255) cTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCg > 2:1560664/1‑86 (MQ=255) aaTCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg > 2:2685013/1‑63 (MQ=255) aaTCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg < 1:2685013/63‑1 (MQ=255) cTGCACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTgg > 2:519476/1‑60 (MQ=255) gggCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCaaa > 2:2365299/1‑112 (MQ=255) gggCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCaaa < 1:2365299/112‑1 (MQ=255) tCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCa > 2:2549245/1‑88 (MQ=255) tCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCa < 1:2549245/88‑1 (MQ=255) tCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgc > 2:1847042/1‑150 (MQ=255) tCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAAccgc > 2:540300/1‑150 (MQ=255) gCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTgcc < 2:1138955/115‑1 (MQ=255) gCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTgcc > 1:1138955/1‑115 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAaga > 1:2209294/1‑56 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAaga < 2:2209294/56‑1 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCAc > 2:3311034/1‑119 (MQ=255) cccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCAc < 1:3311034/119‑1 (MQ=255) ccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 2:1273549/66‑1 (MQ=255) ccGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg > 1:1273549/1‑66 (MQ=255) ccGCTCCCACAGGCACAGGGCATACGACCTGTGGGAGCGGGCGGGCCCGCGACGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCACATCCATTGCCGCCACCTCGCCTTCCCGGAACGCACTCAAccgccccc > 2:1867557/1‑147 (MQ=255) gCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa < 1:2814976/127‑1 (MQ=255) gCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGAGTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCa > 2:2814976/1‑127 (MQ=255) tCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg > 2:94102/1‑62 (MQ=255) tCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:94102/62‑1 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAc > 1:3182086/1‑146 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAAc < 2:3182086/146‑1 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 2:2582891/1‑150 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 1:1444421/1‑150 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 1:1237433/1‑150 (MQ=255) ccACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTCCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCt > 1:2239075/1‑150 (MQ=255) cacaGGTACAGGGCATACGGCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCg < 1:165252/53‑1 (MQ=255) cacaGGTACAGGGCATACGGCCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCg > 2:165252/1‑53 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc > 1:1318117/1‑39 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGc < 2:1318117/39‑1 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg < 1:970727/59‑1 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAg > 2:970727/1‑59 (MQ=255) cacaGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTc > 1:2799900/1‑150 (MQ=255) caGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgc > 1:237093/1‑150 (MQ=255) caGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTCCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgc < 2:2239075/150‑1 (MQ=255) gTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTcgccgc > 2:544995/1‑150 (MQ=255) | GAAGCGGCGCTGGGGTTGCAGGTACAGGATGAGCTGGCGCTGTATGCGCAAAGCGAGCGCCGGTCGCTGCAGGCCTGTGCACAGGCGTTGAACCTGGGTTCGATGTAAATCTGTACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTACAGGGCATACGACCTGTGGGAGCGGGCGAGCCCGCGAAGAGGCCGGTGCAGGTGATCAAAGACGCGGCAGGATTTCCACATCCGGCAAATCCATTGCCGCCACCTCGCCTTCCAGGAACGCACTCAACCGCCGCAACCGCTCGCCGC > NC_002947/6006481‑6006778 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |