New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 545318611 (0.160)9 (0.200)
+CTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA
6/170 5.2 27.6% intergenic (+151/‑204) lnt/PP_4791 apolipoprotein N‑acyltransferase/transposase
?NC_002947 5545674 = 63 (0.920)intergenic (‑766/+111) rpsF/rlmB 30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB
Rejected: Coverage evenness skew score above cutoff.

GATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5453041‑5453186
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGA  >  NC_002947/5545674‑5545727
                                                                                                                                                  ||||||||||||||||||||||||||||||||||||||||||||||||                                                      
GATACGCTACCACTGTAGGAGATCACCCCGCCCTGCCGGGTTTCGCGGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTT                                                                                                    <  2:566439/150‑1
                                                                                            GCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCT                                                <  1:1530737/110‑1
                                                                                            GCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCT                                                >  2:1530737/1‑110
                                                                                                ACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGG    >  1:287952/1‑150
                                                                                                  ATTTTGAAAAAGAAAAGGCGGTTGGCACGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTGGCTGCGGAACTGAAGCCGTACCCCTAATGTTTGCTGCGCGACAGCGCTGCGCGGTAGGGCTGGGTGATCTGCTACAGGGcc  >  1:587106/1‑148
                                                                                                          AAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGG                    <  1:197019/124‑1
                                                                                                          AAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTGCTGCGCGACAGCGCAGCCCGGAAGGGCTGG                    >  2:197019/1‑124
                                                                                                                              GGTAGGGCCAACCGCCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTTG                                                  >  2:886258/1‑74
                                                                                                                                            CCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACC                                                           >  1:896113/1‑51
                                                                                                                                            CCTTTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACC                                                           <  2:896113/51‑1
                                                                                                                                               TTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTT                                                   >  1:1147416/1‑56
                                                                                                                                               TTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCATGTTT                                                   <  2:1147416/56‑1
                                                                                                                                               TTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA                                                        <  1:1465039/51‑1
                                                                                                                                               TTTCTTTTTCAAAATGTCAGCGTCGCTGCGGAACTGAAGCCGTACACCTCA                                                        >  2:1465039/1‑51
                                                                                                                                                  ||||||||||||||||||||||||||||||||||||||||||||||||                                                      
GATACGCGACCACTGTAGGAGATCACCCAGCCCTTCCGGGCTGCGCTGTCGCGCAGCAAACATGAGGTGTACGGCTTCAGTTCCGCAGCGACGCTGACATTTTGAAAAAGAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5453041‑5453186
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTTTGCTGTGCGACAGCGCAGCCCGGAAGGGCTGGGTGATCTCCTACAGGGGA  >  NC_002947/5545674‑5545727

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.