| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5538612 | 48 (0.700) | 10 (0.170) | 10/224 | 5.1 | 19.5% | intergenic (+54/+67) | PP_4871/PP_4872 | lysine decarboxylase family protein/hypothetical protein |
| ? | NC_002947 | = 5538625 | 42 (0.730) | intergenic (+67/+54) | PP_4871/PP_4872 | lysine decarboxylase family protein/hypothetical protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CCGCAACACCGGGCGATGTTGCTGCTGGGGCAGCAGCCGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5538445‑5538612‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGCTCGTCCGGCTG < NC_002947/5538625‑5538478 CCGCAACACCGGGCGATGTTGCTGCTGGGGCAGCAGCCGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCG < 1:1469537/150‑1 CGCAACACCGGGCGATGTTGCTGCTGGGGCAGCAGCCGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTTGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGC < 1:506333/150‑1 AGCAGCCGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGT < 1:920445/150‑1 CGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGC < 1:229087/150‑1 GAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCT < 2:644707/126‑1 GAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCCCCCCCATTGCCT > 1:644707/1‑126 GTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAA < 2:661269/135‑1 GTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAA > 1:661269/1‑135 TGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGC < 2:52017/91‑1 TGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGC > 1:52017/1‑91 GTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTTGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGC > 1:247783/1‑97 GTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTTGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGC < 2:247783/97‑1 TCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCG < 1:1438264/94‑1 TCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCG > 2:1438264/1‑94 AAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGC > 1:418329/1‑51 AAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGC < 2:418329/51‑1 ACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAG > 2:1099155/1‑89 ACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAG < 1:1099155/89‑1 ACAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGGGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAG > 1:1618620/1‑150 CAAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGC < 1:201609/150‑1 AAGGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGCT > 2:152991/1‑150 GGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGG < 1:798802/86‑1 GGCCGCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGG > 2:798802/1‑86 GCTCCCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGCTCGTCCG > 1:457320/1‑150 CCCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGCTCGTCCGGCTG > 1:415228/1‑150 CCGCAACACCGGGCGATGTTGCTGCTGGGGCAGCAGCCGGACGAGCTGCTGGAAGGGATGGACAGCTTTGTGGCGCCGGTCGCGCCTAAGTGGGTCGACAAGCAGCCTGACTGAAGCTGAGACTTTTGGGACCGCTTCGCGGTCCTTTCGCGACACAAGGCCGCTCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5538445‑5538612‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgcgacacaaggccgctcccCCATTGCCTTTGTGGGAGCGGCCTTGTGTCGCGAAAGGACCGCGAAGCGGTCCCAAAAGTCTCAGCTTCAGTCAGGCTGCTTGTCGACCCACTTAGGCGCGACCGGCGCCACAAAGCTGTCCATCCCTTCCAGCAGCTCGTCCGGCTG < NC_002947/5538625‑5538478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |