| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 699,725 | 0 | A | G | 56.6% | 9.6 / 90.3 | 76 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| Reads supporting (aligned to +/- strand): ref base A (18/15); new base G (26/17); total (44/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.04e-01 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGGTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCG > NC_002947/699577‑699808 | gaggTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGGTATAGAc > 1:1524303/1‑150 (MQ=38) gTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGa < 2:375115/150‑1 (MQ=38) gTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTAAAC‑AGGGTGTGTTATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATCTGTGATAGATATAGACTGa > 1:1275175/1‑150 (MQ=11) tCAGCGTTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGaa < 2:1026003/150‑1 (MQ=38) tCAGCGGTTCGATCCCGCTTGGCTCCACCGCTTTCGGCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGaa > 1:759956/1‑150 (MQ=255) tCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGaa < 1:701017/150‑1 (MQ=255) tCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGaa > 2:349412/1‑150 (MQ=255) tCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGaa < 1:301613/150‑1 (MQ=38) aGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAaca > 2:1345458/1‑150 (MQ=38) ggTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCa < 1:1012224/150‑1 (MQ=38) ttCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGt > 2:1212257/1‑150 (MQ=39) gATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCTTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTc > 1:1376292/1‑150 (MQ=255) aTCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCa < 1:349412/150‑1 (MQ=38) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgc < 2:413717/150‑1 (MQ=38) cGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgc > 1:392887/1‑150 (MQ=255) tGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGGTATAGACTGAACACCAGTTTCACTGCtggt < 2:1524303/150‑1 (MQ=38) tGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 1:1284931/150‑1 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACGTTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 1:617293/149‑1 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACGTTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt > 2:617293/1‑149 (MQ=255) ggCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggtg < 1:683468/150‑1 (MQ=38) cTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa < 2:38947/139‑1 (MQ=40) cTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCa > 1:38947/1‑139 (MQ=38) cTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGa > 1:1255008/1‑150 (MQ=39) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGAt > 1:277392/1‑150 (MQ=38) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGAt > 1:1188581/1‑150 (MQ=38) tCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGAt > 1:1020789/1‑150 (MQ=39) ccaccaCTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATc < 1:1473281/150‑1 (MQ=39) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCt < 2:1071115/122‑1 (MQ=255) caccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCt > 1:1071115/1‑122 (MQ=255) ccacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 1:1345458/150‑1 (MQ=39) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgctg > 1:1186758/1‑139 (MQ=255) cacTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCActgctg < 2:1186758/139‑1 (MQ=255) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATTAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTaa > 2:1060846/1‑150 (MQ=255) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt < 2:1527381/138‑1 (MQ=255) tttCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCtggt > 1:1527381/1‑138 (MQ=255) cGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTaaa < 1:1212257/150‑1 (MQ=38) cGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt < 2:38227/150‑1 (MQ=38) ttACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAg > 1:869791/1‑150 (MQ=38) aCTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt < 2:891050/143‑1 (MQ=25) aCTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAAttt > 1:891050/1‑143 (MQ=25) cTTGTCAGAACTTAGAGATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTc < 2:1293700/150‑1 (MQ=25) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGGTAGATATAGGCTGAACACCAGTTTCACTGCTGTTGGAGCAGGGGAAGGTATAATTTATGAGTTCt > 2:81530/1‑150 (MQ=11) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAacac < 1:1436167/103‑1 (MQ=255) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAacac > 2:1436167/1‑103 (MQ=255) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt > 1:766105/1‑150 (MQ=25) ttGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCt < 2:464769/150‑1 (MQ=35) gTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGc > 1:846247/1‑150 (MQ=25) gTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg > 1:514458/1‑125 (MQ=37) gTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAgg < 2:514458/125‑1 (MQ=37) tCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCt > 2:1214003/1‑150 (MQ=25) tCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCt > 2:86140/1‑150 (MQ=25) tCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACAAGTTTCACTGCTGGTGGATCAGGCTAATGTAAAATTTGTGAGtttttct > 2:137878/1‑145 (MQ=255) aGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCa > 2:785116/1‑106 (MQ=255) aGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCa < 1:785116/106‑1 (MQ=255) aGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt < 2:736772/104‑1 (MQ=38) aGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGttt > 1:736772/1‑104 (MQ=38) gAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGa > 2:1333459/1‑150 (MQ=34) gAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGa > 1:1559720/1‑150 (MQ=35) aaCTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaa > 1:1124856/1‑150 (MQ=25) aaCTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaa > 1:281055/1‑150 (MQ=25) aCTTATAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGaaa < 1:263541/150‑1 (MQ=25) cTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAag < 2:869791/150‑1 (MQ=25) ttAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTTTTTTTTTTTTTTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCCGGCTAATGTAAAATTTGTGAGTTCTTCTCGAAaga > 2:477289/1‑150 (MQ=11) ttAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga > 2:835058/1‑150 (MQ=25) ttAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGCTCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAaga > 1:405987/1‑150 (MQ=25) aaaTGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCaa < 2:1502174/150‑1 (MQ=35) aTGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCATATCGGTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACg > 1:979942/1‑150 (MQ=25) aTGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAagag < 2:407271/145‑1 (MQ=35) aTGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAagag > 1:407271/1‑145 (MQ=35) gAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTa > 1:1142331/1‑150 (MQ=25) gAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTa < 2:846247/150‑1 (MQ=25) aaCATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTTCGATAGATGTTTAGCAATTCGCATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTAc < 2:1124856/150‑1 (MQ=11) aaCATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTAc > 1:744158/1‑150 (MQ=35) aTTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGGCGGAACACCAGTTTCACTGCTGATGTATCATGCGAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGaa > 1:352060/1‑150 (MQ=11) aTTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGaa > 2:1498951/1‑150 (MQ=35) cTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAGAATTCGGATATGTGATAGATATAGGCTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCg > 1:302274/1‑150 (MQ=11) | GAGGTCAGCGGTTCGATCCCGCTTGGCTCCACCACTTTCGCCGTACGCAGTTACTTGTCAGAACTTAGAAATGAACATTCAGCTCGAATGT‑TGATTTCTGGCTTTTGTCAGATCGTTCTTTAAAAATTCGGATATGTGATAGATATAGACTGAACACCAGTTTCACTGCTGGTGGATCAGGCTAAGGTAAAATTTGTGAGTTCTGCTCGAAAGAGCAACGTACGAATTTTCG > NC_002947/699577‑699808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |