| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 280,199 | Δ1 bp | 6.5% | coding (51/669 nt) | sctS ← | sulfur compound ABC transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 280,199 | 0 | C | . | 6.5% | 194.2 / 7.7 | 62 | coding (51/669 nt) | sctS | sulfur compound ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base C (26/32); new base . (2/2); total (28/34) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 | |||||||||||
GCGTGCCGCGGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTC > NC_002947/280051‑280347 | gcgTGCCGCGGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTca < 1:1168911/150‑1 (MQ=255) cgGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaag > 2:935074‑M2/1‑146 (MQ=255) agaaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCctgctgaagggcg < 2:199686‑M1/150‑14 (MQ=255) gaaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgc > 2:728189‑M2/1‑141 (MQ=255) aaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgcg > 2:130442‑M2/1‑140 (MQ=255) aaCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGgaagggcgcg < 1:422022‑M2/150‑11 (MQ=255) aCGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGGGCAGCACCGTATAACCCGCGCCCTTCA‑GCAAgaaaggcgcgg < 2:74924‑M2/150‑12 (MQ=255) cGACACGTAGACACGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGa < 1:263489/150‑1 (MQ=255) acacGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGt < 1:568717/150‑1 (MQ=255) cccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACgc < 1:53744/150‑2 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGg > 1:97984‑M2/1‑126 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGg < 2:97984‑M2/127‑2 (MQ=255) ccGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAg < 2:1098581/150‑1 (MQ=255) cagccagTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAg > 2:1145660/1‑150 (MQ=255) gCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCctgctgaagggc > 2:960582‑M1/1‑104 (MQ=255) gCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCctgctgaagggc < 1:960582‑M1/116‑13 (MQ=255) gACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACAt > 2:271717/1‑150 (MQ=255) gACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACAt < 1:895841/150‑1 (MQ=255) accgCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGGATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCGGCGATCATTTGGTAACATc > 1:316405/4‑150 (MQ=255) cGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCAc < 1:469525/150‑1 (MQ=255) cATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTc < 2:116951/123‑1 (MQ=255) cATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTc > 1:116951/1‑123 (MQ=255) aTCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGGCACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGa > 2:944322/1‑150 (MQ=255) gCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCgg > 1:1229988/1‑150 (MQ=255) aaGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacg < 2:384431‑M2/90‑19 (MQ=255) aaGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacg > 1:384431‑M2/1‑72 (MQ=255) gCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGc < 2:542500/150‑1 (MQ=255) gCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc < 1:1145660/150‑1 (MQ=255) cAGACCGAAGAACAGGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCCATCATGTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGc < 1:474956/150‑1 (MQ=255) aGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacggtgctgctcagt < 2:549910‑M2/90‑31 (MQ=255) aGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCCTGCTGaagggcgcgggttatacggtgctgctcagt > 1:549910‑M2/1‑60 (MQ=255) aagaaCATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCAt > 1:586211/1‑150 (MQ=255) tGCCGCCGGCACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCttt < 1:944322/150‑1 (MQ=255) acacTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGt > 2:385786/1‑150 (MQ=255) acTGAGCAGCACCGTATAACCCGCGCCCTTagcaggaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtct < 2:549910‑M1/90‑60 (MQ=255) acTGAGCAGCACCGTATAACCCGCGCCCTTagcaggaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtct > 1:549910‑M1/1‑31 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTg > 2:586459/1‑127 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTg < 1:586459/127‑1 (MQ=255) tGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGAt > 1:759643/1‑150 (MQ=255) gAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATg < 1:74924/150‑1 (MQ=255) cagcaCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGcc < 2:422022/150‑1 (MQ=255) gcaCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCtt > 1:436254/1‑150 (MQ=255) caCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCttg > 1:923747/1‑150 (MQ=255) caCCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCttg > 2:1093770/1‑150 (MQ=255) cGTATAACCCGCGCCCTTagcaggaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctt < 2:384431‑M1/90‑72 (MQ=255) cGTATAACCCGCGCCCTTagcaggaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctt > 1:384431‑M1/1‑19 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 2:1229988/150‑1 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 1:714130/150‑1 (MQ=255) taACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATgg < 1:1244228/150‑1 (MQ=255) aCCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCt < 1:271717/150‑1 (MQ=255) ccGCGCCTTTCttgctgaagggcgcgggttatacggtgctgcccagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgt < 2:74924‑M1/150‑140 (MQ=255) cgcgCCCTTCctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgtt < 1:422022‑M1/150‑141 (MQ=255) cgcgCCCTTCctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgtt > 2:130442‑M1/1‑10 (MQ=255) gcgcCCTTCctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgttc > 2:728189‑M1/1‑9 (MQ=255) cgcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgttct < 2:199686‑M2/150‑138 (MQ=255) gcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgc < 1:960582‑M2/116‑105 (MQ=255) gcCCTTCA‑GCAGgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgc > 2:960582‑M2/1‑12 (MQ=255) ccTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc < 2:703367/96‑1 (MQ=255) ccTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGc > 1:703367/1‑96 (MQ=255) cTTCctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgggtctacgtgtcgttcttccg > 2:935074‑M1/1‑4 (MQ=255) ttCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGtt > 2:504661/1‑150 (MQ=255) tCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTc < 1:1093770/150‑1 (MQ=255) tCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTc < 2:436254/150‑1 (MQ=255) cctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgg > 1:97984‑M1/1‑1 (MQ=255) cctgctgaagggcgcgggttatacggtgctgctcagtgtcggcggcatgttcttcggtctggtgctgggctttgccctggcgctgatgcggctgtcgaagattctgccgctgaactggctggcgcgg < 2:97984‑M1/127‑127 (MQ=255) | GCGTGCCGCGGAAGAACGACACGTAGACCCGCGCCAGCCAGTTCAGCGGCAGAATCTTCGACAGCCGCATCAGCGCCAGGGCAAAGCCCAGCACCAGACCGAAGAACATGCCGCCGACACTGAGCAGCACCGTATAACCCGCGCCCTTCA‑GCAGGAAGGGCGCGGAGTCGACAACGAGTTGCAGGCTTTCAGCGATCATTTGGTGACATCGGCACCGAAGTACTTCTCGGACAGCTTGGCCAGCGTGCCATCAGCTTTGAGCTTGTCGATGGCCTTGTTGATGGCTGCCAACAGTTC > NC_002947/280051‑280347 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |