New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2522101	49 (1.000)	4 (0.080)	4/242	NT	6.9%	coding (3309/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	= 2522133	60 (1.260)					coding (3341/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein

TTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2521953‑2522101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA  <  NC_002947/2522133‑2522091                                                                                                                                                                                                  TTCAATCGCCTCGGTTGGCGCATAACGAGATACGCCGCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCCACCTTGTGCCTCTTGATCTCAGTCATAACCGGCTCCAGCCGCTGCACATGCTCTTCCACCAACTTTCTCGGCTta                                            >  2:79251/1‑148                                                                                    CATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA  >  1:948929/1‑109                                                                                    CATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA  <  2:948929/109‑1                                                                                         TGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGC         >  1:37810/1‑97                                                                                         TGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTGCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGC         <  2:37810/97‑1                                                                                                                                                                                                  TTCAATCGCTTCGGTTGGCGCATAACGAGATACGCCTCGACGCCCAGGCGATCAGCGTTCTGCATGGTTTGTCCAACCTTGTGCATCTTGATCTCAGTCATAACCGGCTGGAAGCGCTGGACATGAGCTTCCACCAACTTTCTCGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/2521953‑2522101 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgCCCAGCCGACAATGACGCAGGTTCAGGCTGGTCAGCCGAGAAA  <  NC_002947/2522133‑2522091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.