New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2883565 | 49 (1.000) | 4 (0.080) | 4/240 | NT | 7.7% | coding (82/927 nt) | PP_2539 | LysR family transcriptional regulator |
? | NC_002947 | = 2883584 | 49 (1.040) | coding (101/927 nt) | PP_2539 | LysR family transcriptional regulator |
CCCGCAGACGACGCTCTATAGTGCTCGGCATGACGAAACCCCTGCCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2883427‑2883565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCATGCCGAGCACTATAGAGCGTC < NC_002947/2883584‑2883436 CCCGCAGACGACGCTCTATAGTGCTCGGCATGACGAAACCCCTGCCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGTGGCTTCAGCTGCCTT > 2:1041617/1‑150 ATGACGAAACCCCTGCCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGTGGCTTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCG < 1:1015087/139‑1 ATGACGAAACCCCTGCCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGTGGCTTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCG > 2:1015087/1‑139 CCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGT > 1:746146/1‑91 CCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGT < 2:746146/91‑1 CATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGT > 1:786211/1‑58 CATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGT < 2:786211/58‑1 ATCGAGCTGGACCGCTGTGGC‑TC‑GCTGCATAAGGCAGCTGAAGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCA > 1:1041617/1‑150 TTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCATGCCGAGCACTATAGAGCGTC < 1:415821/150‑1 TTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCATGCCGAGCACTATAGAGCGTC < 2:597083/150‑1 TTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCATGCCGAGCACTATAGAGCGTC < 2:671959/150‑1 CCCGCAGACGACGCTCTATAGTGCTCGGCATGACGAAACCCCTGCCGAGCCTGCCTGATGATCCCTTCTCTGGACGCCATTTTTTCTCGCCTGCGCCTTCGCCAGTTGCGCTTGCTGATCGAGCTGGACCGCTGTGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2883427‑2883565 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggctTCAGCTGCCTTATGCAGC‑G‑AGCCACAGCGGTCCAGCTCGATCAGCAAGCGCAACTGGCGAAGGCGCAGGCGAGAAAAAATGGCGTCCAGAGAAGGGATCATCAGGCAGGCTCGGCAGGGGTTTCGTCATGCCGAGCACTATAGAGCGTC < NC_002947/2883584‑2883436 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |