| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3481134 | 43 (0.880) | 4 (0.080) | 4/240 | NT | 7.2% | coding (128/2496 nt) | PP_3090 | OmpA domain‑containing protein |
| ? | NC_002947 | = 3481173 | 62 (1.320) | coding (89/2496 nt) | PP_3090 | OmpA domain‑containing protein | |||||
CCGGTCGGCCGGGGCTGCACTGAGTACGGCCTGGTCGGCGTCGTCGCGCAGCAGGCCTTCAAGGTTGTGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3480992‑3481134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCCTGCTGCGCGACGACGCCGAC < NC_002947/3481173‑3481025 CCGGTCGGCCGGGGCTGCACTGAGTACGGCCTGGTCGGCGTCGTCGCGCAGCAGGCCTTCAAGGTTGTGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCAcccggac < 2:508423/150‑8 CGCAGCAGGCCTTCAAGGTTGTGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCG > 1:494971/1‑142 CGCAGCAGGCCTTCAAGGTTGTGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCG < 2:494971/142‑1 TGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGC > 1:2504/1‑111 TGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGC < 2:2504/111‑1 ACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGC > 1:1136638/1‑62 ACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGC < 2:1136638/62‑1 GCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCCTGCTGCGCGACGACGCC > 2:547833/1‑150 GCCATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCCTGCTGCGCGACGACGCC < 2:752296/150‑1 CATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCC > 1:762588/1‑131 CATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCC < 2:762588/131‑1 ATCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCCTGCTGCGCGACGACGCCGAC > 2:1136604/1‑150 CCGGTCGGCCGGGGCTGCACTGAGTACGGCCTGGTCGGCGTCGTCGCGCAGCAGGCCTTCAAGGTTGTGGTGCTGACCCACGCCGCGGTACAGCAGCAGTACATAGCCCGCCGACAGCAGCAGAAACACACCGATCCCGGCCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3480992‑3481134‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaTCGGCCGCGCCTTCGGCTTCGCCTCGCTGCACAGCCTGCTGGCCGGGATCGGTGTGTTTCTGCTGCTGTCGGCGGGCTATGTACTGCTGCTGTACCGCGGCGTGGGTCAGCACCACAACCTTGAAGGCCTGCTGCGCGACGACGCCGAC < NC_002947/3481173‑3481025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |