New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3511747	43 (0.880)	3 (0.060)	4/238	NT	6.5%	coding (372/4158 nt)	PP_3108	rhs family protein
	?	NC_002947	= 3511759	45 (0.960)					coding (384/4158 nt)	PP_3108	rhs family protein

CCCCCTCAGGGACGATAACCACTGCCTCACCCAACGTGTTCATCAACAGCCGCAAGGCCGCCCGCGTCGAAAAAAGCATCGGTGCCTGCGACAAGCACCCAGGGCCGGTGCAGATTGCCGAAGGCTCGACCAACGTCTTCATCAACAGCGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3511593‑3511747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgccCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAGGCACCGATGCTTTTTTCGACGCGGGCGGCCTTGCGGCTGTTGATGAACACGTTGGGTGAGGCAGTG  <  NC_002947/3511759‑3511612                                                                                                                                                                                                                                                                                                                 CCCCCTCAGGGACGATAACCACTGCCTCACCCAACGTGTTCATCAACAGCCGCAAGGCCGCCCGCGTCGAAAAAAGCATCGGTGCCTGCGACAAGCACCCAGGGCCGGTGCAGATTGCCGAAGGCTCGACCAACGTCTTCATCAACAGCG                                                                                                                                                           >  2:987252/1‑150     caCAGGGACGATAACCACGGCCTCACCCAACGTGTTCATCAACAGCCGCAAGACCGCCCGCGTCGAAAAAAGCATCGGTGCCTGCGACAATCACCCAGGGCCGGTGCAGATTGCCGAAGGCTCGACTAACGTCTTCATCAACAGCGTCGC                                                                                                                                                       <  1:362285/148‑1                                                                                      CTGCGACAAGCACCCAGGGCCGGTGCAGATTGCCGAAGGCTCGACCAACGTCTTCATCAACAGCGTCGCCCTTGCGCGCGGCGGCGACGCTGT                                                                                                                               >  2:28095/1‑93                                                                                                                                  CCAACGTCTTCATCAACAGCGTCGCCCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGG                                                                                                    <  1:445321/76‑1                                                                                                                                  CCAACGTCTTCATCAACAGCGTCGCCCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGG                                                                                                    >  2:445321/1‑76                                                                                                                                                 ACAGCGTCGCCGCCGCGCGCAAGGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAG                                                                    >  1:28095/1‑93                                                                                                                                                         GCCCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAGGCACCGATGCTTTTTTCGACGCGGGCGGCCTTGCGGCTGTTGATGAACACGTTGGGTGAGGCAGT   >  2:1198929/1‑150                                                                                                                                                          CCCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAGGCACCGATGCTTTTTTCGACGCGGGCGGCCTTGCGGCTGTTGATGAACACGTTGGGTGAGGCAGTG  <  2:1182746/150‑1                                                                                                                                                          CCCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAGGCACCGATGCTTTTTTCGACGCGGGCGGCCTTGCGGCTGTTGATGAACACGTTGGGTGAGGCAGTG  >  2:984228/1‑150                                                                                                                                                                                                                                                                                                                 CCCCCTCAGGGACGATAACCACTGCCTCACCCAACGTGTTCATCAACAGCCGCAAGGCCGCCCGCGTCGAAAAAAGCATCGGTGCCTGCGACAAGCACCCAGGGCCGGTGCAGATTGCCGAAGGCTCGACCAACGTCTTCATCAACAGCGTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3511593‑3511747 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcgccCTTGCGCGCGGCGGCGACGCTGTTGATGAAGACGTTGGTCGAGCCTTCGGCAATCTGCACCGGCCCTGGGTGCTTGTCGCAGGCACCGATGCTTTTTTCGACGCGGGCGGCCTTGCGGCTGTTGATGAACACGTTGGGTGAGGCAGTG  <  NC_002947/3511759‑3511612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.