| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3552788 = | 47 (0.960) | 4 (0.080) | 4/240 | NT | 8.6% | coding (402/978 nt) | PP_3137 | group 2 family glycosyl transferase |
| ? | NC_002947 | 3552814 = | 40 (0.850) | coding (428/978 nt) | PP_3137 | group 2 family glycosyl transferase | |||||
GCCGCGGGCCCGCAAACGCACGCACAGTTCCGGCTCTTCTCCGGCGATCAGGTCAGGACGGAAGCCACCCACGGCAG‑CAAAGGCGTCTGCCCGCATCAGCGCATCGCCGCCACAGGCCTTGGCCTCACCGACCGGGGTATCCCACTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3552941‑3552788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACCTGATCGCCGGAGAAGAGCCGGAACTGTGCGTGCGTTTGCGGGCCCGCGGCTGGAAAGTCTGGCGACTGGCT > NC_002947/3552814‑3552962 GCCGCGGGCCCGCAAACGCACGCACAGTTCCGGCTCTTCTCCGGCGATCAGGTCAGGACGGAAGCCACCCACGGCAG‑CAAAGGCGTCTGCCCGCATCAGCGCATCGCCGCCACAGGCCTTGGCCTCACCGACCGGGGTATCCCACTCCAG < 1:969821/150‑1GCCGCGGGCCCGCAAACGCACGCACAGTTCCGGCTCTTCTCCGGCGATCAGGTCAGGACGGAAGCCACCCACGGCAG‑CAAAGGCGTCTGCCCGCATCAGCGCATCGACGCCAAAGACCAAGGCTCCACCTACCTGGTGATCCCACTCCAG > 2:462463/1‑150 CGCGGGCCCGCAAACGCACGCACAGTTCCGGCTCTTCTCCGGCGATCAGGTCAGGACGGAAGCCACCAAC‑GCAGACATAGGCGTCTGCGCTCTCTTGCGTATCGCCGCCACAGGCCTTGGCCTCACCGACCGGGGTATCCCACTCCAGGT < 1:797587/150‑1 TCACCGACCGGGGTATCCCACTCCAGGTCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCT < 1:318445/104‑1 TCACCGACCGGGGTATCCCACTCCAGGTCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCT > 2:318445/1‑104 ACCGACCGGGGTATCCCACTCCAGGTCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACC > 1:494913/1‑106 ACCGACCGGGGTATCCCACTCCAGGTCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACC < 2:494913/106‑1 cgggCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACCTGATCGCCGGAGAAGAGCCGGAACTGTGCGTGCGTTTGCGGGCCCGCGGCTGGAAAGTCTGGCGAC > 1:735393/5‑150 TCGGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACTCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACCTGATCGCCGGAGAAGAGCCGGAACTGTGCGTGCGTTTGCGGGCCCGCGGCTGGAAAGTCTGGCGACTGG > 1:297684/1‑150 GGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACCTGATCGCCGGAGAAGAGCCGGAACTGTGCGTGCGTTTGCGGGCCCGCGGCTGGAAAGTCTGGCGACTGGCT < 2:486599/150‑1 GCCGCGGGCCCGCAAACGCACGCACAGTTCCGGCTCTTCTCCGGCGATCAGGTCAGGACGGAAGCCACCCACGGCAG‑CAAAGGCGTCTGCCCGCATCAGCGCATCGCCGCCACAGGCCTTGGCCTCACCGACCGGGGTATCCCACTCCAGGTCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3552941‑3552788‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgGTGAGGCCAAGGCCTGTGGCGGCGATGCGCTGATGCGGGCAGACGCCTTTGCTGCCGTGGGTGGCTTCCGTCCTGACCTGATCGCCGGAGAAGAGCCGGAACTGTGCGTGCGTTTGCGGGCCCGCGGCTGGAAAGTCTGGCGACTGGCT > NC_002947/3552814‑3552962 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |