New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3776206 = | 46 (0.940) | 3 (0.060) | 3/238 | NT | 6.6% | coding (208/363 nt) | PP_3338 | cytochrome bd‑type quinol oxidase |
? | NC_002947 | 3776224 = | 41 (0.880) | coding (226/363 nt) | PP_3338 | cytochrome bd‑type quinol oxidase |
CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3776357‑3776206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGTTC > NC_002947/3776224‑3776372 CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG > 1:714903/1‑150 GATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG < 1:401536/133‑1 GATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGG > 2:401536/1‑133 TGCCTACCAGCATGAAGCCGTGGCTCTGGCGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGTCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGATTTTC‑CTGGGCTACAGCGGCCTTGGCATCAGCCTGTG < 1:185449/150‑1 CTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCA‑GATTTTCCTGGGCTACAGCGGCCTT < 1:1059728/111‑1 CTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCA‑GATTTTCCTGGGCTACAGCGGCCTT > 2:1059728/1‑111 GGCTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGT < 2:925707/150‑1 CTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATACTGCCCAGTTCGCTTGGCTGATCCGACTGTTC < 2:703123/150‑1 CCAAGCGAACTGGGCAGGATGAACAGTGTGCCTACCAGCATGAAGCCTTGGCTCTGGGGCGGCGCTGCGGCTTCCCAGATGCTGATCGACGGCGGGATGATGTTTGGCCACAGGCTGATGCCAAGGCCGCTGTAGCCCAGGAAAAT‑CTGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3776357‑3776206 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcTACAGCGGCCTTGGCATCAGCCTGTGGCCAAACATCATCCCGCCGTCGATCAGCATCTGGGAAGCCGCAGCGCCGCCCCAGAGCCAAGGCTTCATGCTGGTAGGCACACTGTTCATCCTGCCCAGTTCGCTTGGCTGATCCGACTGTTC > NC_002947/3776224‑3776372 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |