New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4140183 =	48 (0.980)	4 (0.090)	4/234	NT	9.4%	intergenic (+31/‑234)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein
	?	NC_002947	4140222 =	32 (0.700)					intergenic (+70/‑195)	PP_3644/PP_5609	monooxygenase subunit/hypothetical protein

GAAATTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4140339‑4140183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  >  NC_002947/4140222‑4140368                                                                                                                                                                                                                                                                                                                  GAAATTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGG                                                                                                                                                            >  1:580095/1‑150  AAATTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGA                                                                                                                                                           >  2:1072450/1‑150   AATTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAG                                                                                                                                                          <  1:514911/150‑1     TTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCG                                                                                                                                                        <  2:1020274/150‑1     TTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCG                                                                                                                                                        <  2:644341/150‑1                       GAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAGAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGG                                                                                                                                                      <  1:1223572/134‑1                       GAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGG                                                                                                                                                      >  2:1223572/1‑134                                                                                                                AAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTT                                                       <  1:805415/140‑1                                                                                                                AAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTT                                                       >  2:805415/1‑140                                                                                                                         CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCG                                             >  1:39515/1‑141                                                                                                                         CCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCG                                             <  2:39515/141‑1                                                                                                                                                         CGGGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTA    <  1:644341/150‑1                                                                                                                                                           GGCTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  <  2:499866/150‑1                                                                                                                                                                                                                                                                                                                  GAAATTTCTCTTGCCGGGGGACGAAAGGTGGCCTGATGCCTTGATTTCTCTGTTGTCTGTACTGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGGACTGCACAGGTTTCAAAAAAAAGCCCGCTCACGCAGGCCGAAGGGGCCCACGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4140339‑4140183 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gagcgggcTTTTTTTTGAAACCTGTGCAGTCCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCAGTACAGACAACAGAGAAATCAAGGCATCAGGCCACCTTTCGTCCCCCGGCAAGAGAAATTTCCTGACACCTCTTGCACAACAAATATTATG  >  NC_002947/4140222‑4140368

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.