| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 4961810 | 65 (1.330) | 3 (0.070) | 3/234 | NT | 4.3% | coding (673/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC |
| ? | NC_002947 | = 4961828 | 74 (1.610) | coding (655/1356 nt) | atoC | two‑component system DNA‑binding transcriptional activator AtoC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCGCCGGCCAGGTCGCGGTTGGTGGTGGCCAGCACCCTAATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4961658‑4961810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagcagGCCGAAGGCGGCACCTTGCTGCTCGACGAAATCTCGGAAATGCCCATGGCCTTGCAGGCCAAGCTGCTGCGTGTGCTGCAGGAACGCGAGGTGGAGCGGGTAGGCGGGCGCAAGCCGATCAGCCTGGACATTAGGGTGCTGGCCACCA < NC_002947/4961828‑4961681 TTCGCCGGCCAGGTCGCGGTTGGTGGTGGCCAGCACCCTAATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAG > 2:383798/1‑150TTCGCCGGCCAGGTCGCGGTTGGTGGTGGCCAGCACCCTAATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAG < 2:578299/150‑1 ATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGT > 1:100662/1‑106 ATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGT < 2:100662/106‑1 TCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAGCAGGCCGAAGGCGGCACCTTGCTGCTCGACGAAATCTCGGAAA < 1:383798/150‑1 GCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAGCAGGCCGAAGGCGGCACCTTGCTGCTCGAC > 1:901819/1‑118 GCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAGCAGGCCGAAGGCGGCACCTTGCTGCTCGAC < 2:901819/118‑1 CTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTC < 1:1238414/79‑1 CTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTC > 2:1238414/1‑79 AGGCCGAAGGCGGCACCTTGCTGCTCGACGAAATCTCGGAAATGCCCATGGCCTTGCAGGCCAAGCTGCTGCGTGTGCTGCAGGAACGCGAGGTGGAGCGGGTAGGCGGGCGCAAGCCGATCAGCCTGGACATTAGGGTGCTGGCCACCA < 1:842727/150‑1 TTCGCCGGCCAGGTCGCGGTTGGTGGTGGCCAGCACCCTAATGTCCAGGCTGATCGGCTTGCGCCCGCCTACCCGCTCCACCTCGCGTTCCTGCAGCACACGCAGCAGCTTGGCCTGCAAGGCCATGGGCATTTCCGAGATTTCGTCGAGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/4961658‑4961810‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgagcagGCCGAAGGCGGCACCTTGCTGCTCGACGAAATCTCGGAAATGCCCATGGCCTTGCAGGCCAAGCTGCTGCGTGTGCTGCAGGAACGCGAGGTGGAGCGGGTAGGCGGGCGCAAGCCGATCAGCCTGGACATTAGGGTGCTGGCCACCA < NC_002947/4961828‑4961681 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |