New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 5477496 | 44 (0.900) | 4 (0.080) | 4/240 | NT | 8.9% | coding (345/594 nt) | PP_4814 | ATP‑dependent protease La domain‑containing protein |
? | NC_002947 | = 5477510 | 40 (0.850) | coding (331/594 nt) | PP_4814 | ATP‑dependent protease La domain‑containing protein |
TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5477344‑5477496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC < NC_002947/5477510‑5477363 TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGACAGAGCCCGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG < 2:466617/150‑1 AGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG > 1:575678/1‑132 AGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGG < 2:575678/132‑1 GTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAG‑GCCGACAG < 1:1222531/45‑1 GTCGTCATCGGCCTCCAGCAACGGGCTGCCGGAGCAG‑GCCGACAG > 2:1222531/1‑45 ATCGGCCTCCAGCAACGGGCTGTCGG‑CCTGCTCCGGCAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTG > 1:562199/1‑133 ATCGGCCTCCAGCAACGGGCTGTCGG‑CCTGCTCCGGCAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTG < 2:562199/133‑1 CTGCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTAC < 1:735845/150‑1 TGCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC > 2:547652/1‑150 TCTTCCATGAACGGCAACAGGTACGCCAGCTGATTGGCCAGCGCCTGACGCCCGTCCACCGGCCGCGGCATGCCCAGCGCTTCGACCATGGGGTGCTCACCCAGGGCCACCAGCAGCGCCAATAGGTCGTCATCGGCCTCCAGCAACGGGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5477344‑5477496 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggctgCCGGAGCAG‑GCCGACAGCCCGTTGCTGGAGGCCGATGACGACCTATTGGCGCTGCTGGTGGCCCTGGGTGAGCACCCCATGGTCGAAGCGCTGGGCATGCCGCGGCCGGTGGACGGGCGTCAGGCGCTGGCCAATCAGCTGGCGTACC < NC_002947/5477510‑5477363 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |