New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5899429 = | 48 (0.980) | 5 (0.110) | 4/236 | NT | 10.8% | coding (1515/3054 nt) | PP_5173 | RND family transporter |
? | NC_002947 | 5899449 = | 37 (0.800) | coding (1495/3054 nt) | PP_5173 | RND family transporter |
CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5899584‑5899429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG > NC_002947/5899449‑5899592 CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑T < 1:231001/150‑1 CAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGA < 1:855420/150‑1 CCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCAC < 2:706653/150‑1 GTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGA > 1:951226/1‑103 GTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCA‑GCCTCGTGAGCCTTGAGCTTGTCGCCTTTGA < 2:951226/103‑1 tCTCAAGGCTCACGAGGC‑CCAGCCTTGAGCTTGTCGCCTTGGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCTGAt < 1:685795/149‑2 TCAAGGCTCACGAGGC‑TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACGGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACa > 2:685795/1‑149 TGAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGGATTCACCCGGAGACCTGGCGTTGAGGCCGATA > 2:612609/1‑150 GAGCCTTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG < 1:413788/150‑1 CTCAACGCCAGTTCTGCGGGTGAATACACCTTCACCCTGTTCGCGGTGATTGCCGTGGCCCTGATCGTGTCGTGGGTGGTGGCTGTGTTCTTCGCGCCGGTGCTTGGCGTGCATATTCTCAAAGGCGACAAGCTCAAGGCTCACGAGGC‑TGAGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5899584‑5899429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagcctTGAGCTTGTCGCCTTTGAGAATATGCACGCCAAGCACCGGCGCGAAGAACACAGCCACCACCCACGACACGATCAGGGCCACGGCAATCACCGCGAACAGGGTGAAGGTGTATTCACCCGCAGAACTGGCGTTGAGGCCGATAG > NC_002947/5899449‑5899592 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |