New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	529914 =	40 (0.820)	6 (0.130)	6/228	NT	12.2%	intergenic (+8/‑176)	PP_5SC/birA	5S ribosomal RNA/bifunctional biotin‑[acetyl‑CoA‑carboxylase] ligase/biotin operon repressor BirA
	?	NC_002947	703050 =	50 (1.120)					intergenic (+44/‑215)	PP_5SD/PP_0598	5S ribosomal RNA/paraquat‑inducible protein A

GACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACAGCCCATGGCTAT  >  NC_002947/529768‑530058                                                                                                                                                   |                                                                                                                                                 tcctgaagagtgtgcgggggtgcgcccctgcctggcgttgcacccatcccttgtaggagcgggtttacccgcaaacaccggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCaaa                                                                                                                                               <  1:950321‑M1/4‑1 (MQ=255)                                        ttGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTtgt                                                                                                        <  1:928554/150‑1 (MQ=11)                                          acccatcccttgtaggagcgggtttacccgcaaacaccggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAAccc                                                                                                                                           >  1:1087209‑M1/106‑113 (MQ=255)                                          acccatcccttgtaggagcgggtttacccgcaaacaccggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAAccc                                                                                                                                           <  2:1087209‑M1/8‑1 (MQ=255)                                           gAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTggg                                                                                                     >  2:1029690/1‑150 (MQ=32)                                            ccatcccttgtaggagcgggtttacccgcaaacaccggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGTAggg                                                                                                                     <  2:618254‑M1/30‑1 (MQ=255)                                            ccatcccttgtaggagcgggtttacccgcaaacaccggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGTAggg                                                                                                                     >  1:618254‑M1/104‑133 (MQ=255)                                                accTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTaa                                                                                                <  2:70280/150‑1 (MQ=35)                                                   tGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTaaaaa                                                                                             <  2:938266/150‑1 (MQ=38)                                                        ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTtgt                                                                                                        >  2:780003/1‑134 (MQ=11)                                                        ccatcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTtgt                                                                                                        <  1:780003/134‑1 (MQ=11)                                                          atcccGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGACTTTGTGGGCTTAAAAATCCTGGc                                                                                      >  1:1166844/1‑150 (MQ=255)                                                           tcccGAACTCCGTAGTGCAACGATACATAGACGATTCCAGTATGTGCTTTCTCTATTTGATAGTAGGTCATCGTCAATATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGcc                                                                                     >  2:978868/1‑150 (MQ=14)                                                             ccGAACTCATTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCtt                                                                                   >  2:643388/1‑150 (MQ=255)                                                               gAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTTCTCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGc                                                                                 <  1:157271/150‑1 (MQ=255)                                                                     agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTgg                                                                                                      >  2:773024/1‑123 (MQ=32)                                                                     agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTgg                                                                                                      <  1:773024/123‑1 (MQ=32)                                                                     agtagtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGc                                                                           <  1:1270337/150‑1 (MQ=255)                                                                         gtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGctcct                                                                       >  1:162247/1‑150 (MQ=255)                                                                         gtGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGctcct                                                                       >  2:1229850/1‑150 (MQ=255)                                                                          tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCt                                                                                         <  1:269988/131‑1 (MQ=255)                                                                          tGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTGAAAAATCCt                                                                                         >  2:269988/1‑131 (MQ=255)                                                                              aCGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCtg                                                                  <  1:1229850/150‑1 (MQ=255)                                                                               cggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAAcccc                                                                                                                                          >  2:478921‑M1/69‑77 (MQ=255)                                                                               cggcaacgccggtgccatctccgctcccgcagtgattcgagcagttccagtttttttcccaccaaagaCAAAAcccc                                                                                                                                          <  1:478921‑M1/9‑1 (MQ=255)                                                                                 aTGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGa                                                               <  1:823372/150‑1 (MQ=255)                                                                                      tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCg                                                          >  1:811268/1‑150 (MQ=255)                                                                                      tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCg                                                          >  2:284977/1‑150 (MQ=255)                                                                                      tCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCg                                                          >  1:573447/1‑150 (MQ=255)                                                                                               tctgcgctcccgcagtgattcgagcagttccagtttttttgcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGTAGGGGtt                                                                                                                  <  2:763910‑M1/33‑1 (MQ=255)                                                                                               tctgcgctcccgcagtgattcgagcagttccagtttttttgcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGTAGGGGtt                                                                                                                  >  1:763910‑M1/53‑85 (MQ=255)                                                                                                   tgtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCctct                                             >  1:875860/1‑150 (MQ=255)                                                                                                    gtgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCtctc                                            <  2:1166844/150‑1 (MQ=255)                                                                                                     tgGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTcc                                           <  2:404632/150‑1 (MQ=255)                                                                                                       gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTg                                         >  1:969776/1‑150 (MQ=255)                                                                                                       gggTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTGCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTg                                         <  2:875860/150‑1 (MQ=255)                                                                                                          tttCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAg                                      >  1:1022537/1‑150 (MQ=255)                                                                                                               ccATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCt                                 >  2:1133320/1‑150 (MQ=255)                                                                                                                cATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCtt                                >  2:392499/1‑150 (MQ=255)                                                                                                                  tgtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCtttt                              <  2:158606/150‑1 (MQ=255)                                                                                                                  tgtgAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCtttt                              <  1:392499/150‑1 (MQ=255)                                                                                                                      agagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTa                          <  2:969776/150‑1 (MQ=255)                                                                                                                       gagTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTAt                         <  2:162247/150‑1 (MQ=255)                                                                                                                            ggTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAg                    <  2:1022537/150‑1 (MQ=255)                                                                                                                                  cGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACa              <  2:811268/150‑1 (MQ=255)                                                                                                                                       tcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGt                                                                                                                         >  2:174826‑M1/13‑38 (MQ=255)                                                                                                                                       tcccaccaaagaCAAAACCCCTATCTGCGCATGCAGGt                                                                                                                         <  1:174826‑M1/26‑1 (MQ=255)                                                                                                                                           gcATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCTGCCTCTCCTCCAGTGCCTTTTCCTATGCAAGCCAACGTCCCATggt     >  2:324602/2‑149 (MQ=37)                                                                                                                                            cATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACAGCCCATGGCt    <  2:1050054/150‑1 (MQ=255)                                                                                                                                             aTTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTGCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCAAACAGCCCATGGCTa   >  2:326325/1‑150 (MQ=255)                                                                                                                                             aTTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGG‑TTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACAGCCCATGGCTAt  >  1:14726/1‑150 (MQ=255)                                                                                                                                              tttCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACAGCCCATGGCTAt  <  1:1029690/150‑1 (MQ=255)                                                                                                                                                agaCAAAACCCCTACCTGCATGCGCAGATAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTa                          >  2:108646‑M1/4‑124 (MQ=255)                                                                                                                                                agaCAAAACCCCTACCTGCATGCGCAGATAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTa                          <  1:108646‑M1/121‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 GACATTCTGGCAACAGAATTTCTTGACGACCATAGAGCATTGGAACCACCTGATCCCATCCCGAACTCAGTAGTGAAACGATGCATCGCCGATGGTAGTGTGGGGTTTCCCCATGTGAGAGTAGGTCATCGTCAAGATTCATTTCGCAAAACCCCTATCTGCGCATGCAGGTAGGGGTTTTGTCTTTGTGGGCTTAAAAATCCTGGCCTTGCCAATGCTCCTCCCTGTGATTGCGATACGCGGCCTCTCCTGCAGGCCCTTTTCCTATGCAAGCCAACAGCCCATGGCTAT  >  NC_002947/529768‑530058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.