New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	922749 =	48 (0.980)	3 (0.060)	4/248	NT	6.3%	coding (282/1185 nt)	PP_0803	protein secretion ABC transporter permease
	?	NC_002947	922788 =	42 (0.860)					coding (243/1185 nt)	PP_0803	protein secretion ABC transporter permease

GTTTCGGCATCGATCAGGTCAGGAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCG  >  NC_002947/922600‑922893                                                                                                                                                      |                                                                                                                                                 gTTTCGGTATCGATCAGGTCAGGAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGCCTTGCCGGTCTCCTCTGCCTGCAGGTGGGCCTGGCTGGCCCGGGCAGCTCGGTACTTGGCCTCGCTTTCACCCCCGCTGGAAGCCGCCTTggtc                                                                                                                                                  <  2:72094/150‑1 (MQ=255)  tttCGGCATCGATCAGGTCAGGACAAGTGCTCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTggtcg                                                                                                                                                 <  1:668/150‑1 (MQ=255)             aTCAGGTCAGGAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTgg                                                                                                                                      <  2:323768/150‑1 (MQ=255)                  gtcaggAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCGCGGCCAg                                                                                                                                 >  2:928906/1‑150 (MQ=255)                  gtcaggAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTGTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCGCGGCCAg                                                                                                                                 >  2:928208/1‑150 (MQ=255)                  gtcaggAGAGTCGCGCAGGCTCTCCGGGAAGCCCAGTGGCTTGCGGGGGCACTCTGCCTGCCGGCGGGCCTGGCTGGCTCGGCCAGCCCGGCACTTGGCCTGGCTTTCACCAACGCTTGAAGCCGTCTTGGTCGGGTCGAGCTTGGCCac                                                                                                                                 >  2:216024/1‑149 (MQ=255)                   tcaggAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGc                                                                                                                                <  1:512131/150‑1 (MQ=255)                         gagTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTgg                                                                                                                          <  2:1112188/150‑1 (MQ=255)                                      tctcCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCa                                                                                                             >  1:913732/1‑150 (MQ=255)                                          cGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTCCAGGAGGGTTAGTGCCGCCCTGGCGGCTCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTc                                                                                                         <  1:1249990/150‑1 (MQ=255)                                                  tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTg                                                                                                                                       <  2:175819/112‑1 (MQ=255)                                                  tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTg                                                                                                                                       >  1:175819/1‑112 (MQ=255)                                                  tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCgg                                                                                                 <  1:523649/150‑1 (MQ=255)                                                  tCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGAAATCTTCGTGGGCCTGCCCTGGGCTAGCACCTGGCCGCGCTCGACCAGGTCACCTTCgg                                                                                                 >  1:926611/1‑150 (MQ=255)                                                     gTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCCCGCTATTAGGCCTCGCTGTGTTGGATGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCa                                                                                              >  1:1120539/1‑150 (MQ=255)                                                      accggcacaggcaaggtcattccaagttcgcgagagcaggtcattcagtcgttcgagggcggtatcgtcgcgcagatgagcgtggccgaaggtgacCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGt                                                                                                          <  1:878958‑M1/41‑1 (MQ=255)                                                        gCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGc                                                                                           >  2:806573/1‑150 (MQ=255)                                                                gTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCAc                                                                                                                              <  1:1272515/107‑1 (MQ=255)                                                                gTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCAc                                                                                                                              >  2:1272515/1‑107 (MQ=255)                                                                     ctctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgac                                                                              >  1:289975/1‑150 (MQ=255)                                                                     ctctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTAGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgac                                                                              >  1:500708/1‑150 (MQ=255)                                                                      tctGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGcgacg                                                                             >  2:560816/1‑150 (MQ=255)                                                                        tgcctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGAt                                                                           <  2:342448/150‑1 (MQ=255)                                                                          cctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCAc                                                                                                       >  1:1280540/1‑120 (MQ=255)                                                                          cctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCAc                                                                                                       <  2:1280540/120‑1 (MQ=255)                                                                           ctgcAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGAGGGTAcc                                                                        >  1:512282/1‑150 (MQ=255)                                                                                     gCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTgg                                                                                                                                      <  1:1212588/78‑1 (MQ=255)                                                                                     gCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTgg                                                                                                                                      >  2:1212588/1‑78 (MQ=255)                                                                                         ggctggcCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACt                                                          <  2:289975/150‑1 (MQ=255)                                                                                                         gcgGTACTTGGCCTCGCTTTCACCCACGCTGTAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTcg                                          <  1:216024/150‑1 (MQ=255)                                                                                                          cgGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTAGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTcgc                                         <  2:500708/150‑1 (MQ=255)                                                                                                                 tGGCCTCGTTTTCACCCACGCTGGAAGCCGTCTTGTTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGACCTCGAACGACTGAATGACCTGCTCTCGCGAACTTg                                  <  1:387409/150‑1 (MQ=255)                                                                                                                 tGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATATCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTg                                  <  2:905547/150‑1 (MQ=255)                                                                                                                   gCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTc                                                                  <  2:115760/116‑1 (MQ=255)                                                                                                                   gCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTc                                                                  >  1:115760/1‑116 (MQ=255)                                                                                                                    ccTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGaa                               <  1:806573/150‑1 (MQ=255)                                                                                                                     cTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAAt                              >  1:496221/1‑150 (MQ=255)                                                                                                                     cTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTAGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAAt                              <  2:926611/150‑1 (MQ=255)                                                                                                                         cTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGAcc                          <  2:1256184/150‑1 (MQ=255)                                                                                                                         cTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGAcc                          <  1:275871/150‑1 (MQ=255)                                                                                                                              aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAAc                                                              >  2:296607/1‑109 (MQ=255)                                                                                                                              aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAAc                                                              <  1:296607/109‑1 (MQ=255)                                                                                                                              aCCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGcc                     >  2:1223906/1‑150 (MQ=255)                                                                                                                               cccACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCt                    <  2:1263825/150‑1 (MQ=255)                                                                                                                                ccACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCtg                   >  2:705401/1‑150 (MQ=255)                                                                                                                                 cACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGaa                                      >  2:783386/1‑130 (MQ=255)                                                                                                                                 cACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGaa                                      <  1:783386/130‑1 (MQ=255)                                                                                                                                  aCGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCtgtg                 >  2:811603/1‑150 (MQ=255)                                                                                                                                        gAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTg           <  1:1223906/150‑1 (MQ=255)                                                                                                                                            ccGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACtt                                   >  2:706476/1‑122 (MQ=255)                                                                                                                                            ccGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACtt                                   <  1:706476/122‑1 (MQ=255)                                                                                                                                             gaaggtgacCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGa         >  2:1078233‑M1/10‑147 (MQ=255)                                                                                                                                             gaaggtgacCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGa         <  1:1078233‑M1/138‑1 (MQ=255)                                                                                                                                                 ttGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCg  >  2:186722/1‑150 (MQ=255)                                                                                                                                                 ctGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCCCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCg  <  1:182022/149‑1 (MQ=255)                                                                                                                                                    acCTGGTCGAGCGCGGCCAGGTGCTGGCCCAGCTCGACCCGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGt            <  2:878958‑M1/135‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                 GTTTCGGCATCGATCAGGTCAGGAGAGTCGCGCAGGCTCTCCGGGAAGGTCAGTGGCTTGCCGGTCACCTCTGCCTGCAGGCGGGCCTGGCTGGCCCTGGCAGCGCGGTACTTGGCCTCGCTTTCACCCACGCTGGAAGCCGTCTTGGTCGGGTCGAGCTGGGCCAGCACCTGGCCGCGCTCGACCAGGTCACCTTCGGCCACGCTCATCTGCGCGACGATACCGCCCTCGAACGACTGAATGACCTGCTCTCGCGAACTTGGAATGACCTTGCCTGTGCCGGTGGATACCTCG  >  NC_002947/922600‑922893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.