New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2234970 =	53 (1.080)	5 (0.110)	5/238	NT	8.4%	coding (38/2016 nt)	uvrB	uvrABC excinuclease protein B
	?	NC_002947	2234999 =	59 (1.260)					coding (67/2016 nt)	uvrB	uvrABC excinuclease protein B

CACCGTTGCAGGCGCCCACACCTGTGCCTTGAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGCCCGACGCTGG  >  NC_002947/2234827‑2235113                                                                                                                                                |                                                                                                                                                 cACCGTTGCAGGCGCCCACACCTGTGCCTTTAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTGCTTCGTGTCCGAGTTCCAGCCCGTCCCACGGTGCCAGCCGGCTGCCgt                                                                                                                                            >  2:538197/1‑149 (MQ=255)            gcgcCCACACCTGTGCCTTGAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCGAGCTCGGCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAgg                                                                                                                                >  1:84724/1‑150 (MQ=255)            gcgcCCACACCTGTGCCTTGAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAgg                                                                                                                                <  2:407625/150‑1 (MQ=255)                       ccagcaccagcgtcgggcgctgcacctgctggatgacgttggcaatgctgaaggtcttgcccgaaccggtcaccccgagcaacgtctggtgcgacagccccgcctcgatgccttcgaccaaCTGGCGACCAGCC‑CGAGGCTATCCGCCAg                                                                                                                     >  2:868042‑M1/122‑150 (MQ=255)                        cagcaccagcgtcgggcgctgcacctgctggatgacgttggcaatgctgaaggtcttgcccgaaccggtcaccccgagcaacgtctggtgcgacagccccgcctcgatgccttcgaccaaCTGGCGACCAGCC‑CGAGGCTATCCGCCAGt                                                                                                                    <  1:393115‑M1/30‑1 (MQ=255)                             ttGAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTc                                                                                                               >  1:202640/1‑150 (MQ=255)                                aaaGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGaa                                                                                                            >  2:902024/1‑150 (MQ=255)                                  aGCGCCCCCGATCGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAgg                                                                                                          <  1:449917/150‑1 (MQ=255)                                               gggCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCgggg                                                                                             <  1:538197/150‑1 (MQ=255)                                                 gcgcATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCt                                                                                           >  2:1235663/1‑150 (MQ=255)                                                        tGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCAc                                                                                    <  2:917046/150‑1 (MQ=255)                                                              taGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACg                                                                              >  2:644627/1‑150 (MQ=255)                                                              taGACTACAGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACg                                                                              >  1:754876/1‑150 (MQ=255)                                                                gACTACTGGCTAAATTTACCGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGtt                                                                            >  2:656151/1‑150 (MQ=255)                                                                gACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGtt                                                                            <  1:469322/150‑1 (MQ=255)                                                                gACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGACTGTCGCACCAGACGtt                                                                            >  1:279745/1‑150 (MQ=255)                                                                   tactGGATAAATTTACAGCTACTTCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCt                                                                         >  2:955105/1‑150 (MQ=255)                                                                     ctGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCg                                                                       <  1:1235663/150‑1 (MQ=255)                                                                            aaTTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGTTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGAc                                                                <  2:754876/150‑1 (MQ=255)                                                                            aaTTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGAc                                                                >  2:613675/1‑150 (MQ=255)                                                                              tttACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCg                                                              >  2:572580/1‑150 (MQ=255)                                                                              tttACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCg                                                              >  2:962387/1‑150 (MQ=255)                                                                                   ccgaaccggtcaccccgagcaacgtctggtgcgacagccccgcctcgatgccttcgaccaaCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGt                                                                                                                <  2:637034‑M1/34‑1 (MQ=255)                                                                                   ccgaaccggtcaccccgagcaacgtctggtgcgacagccccgcctcgatgccttcgaccaaCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGt                                                                                                                >  1:637034‑M1/62‑95 (MQ=255)                                                                                   aGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCg                                                         >  1:737064/1‑150 (MQ=255)                                                                                        ctgcACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCaa                                                    <  2:737064/150‑1 (MQ=255)                                                                                          gcACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGa                                                  >  2:812340/1‑150 (MQ=255)                                                                                           cACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGAc                                                 <  1:656151/150‑1 (MQ=255)                                                                                             ccGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTc                                                                                                               <  2:871570/86‑1 (MQ=255)                                                                                             ccGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTc                                                                                                               >  1:871570/1‑86 (MQ=255)                                                                                             ccGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCt                                               >  2:957148/1‑150 (MQ=255)                                                                                                cgAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCa                                            <  1:340381/150‑1 (MQ=255)                                                                                                     tCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCAtt                                       <  1:902024/150‑1 (MQ=255)                                                                                                       cTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGTCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGCGGGGGGGCTGTCGCGCCAGACGTTGCTCGGAGTGACCGGTTCGGGCAAGACCTTCAGAATTgg                                     >  1:343105/1‑149 (MQ=255)                                                                                                          cATGTACGAGTTCCAGCTGGTCACCCTTTTCCAGACGGGTGGCGACCAGTC‑CGAGGCGATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCac                                  <  2:279745/150‑2 (MQ=255)                                                                                                           aTGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAAc                                 <  1:1203321/150‑1 (MQ=255)                                                                                                              tCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCggg                                                       <  1:1078274/125‑1 (MQ=255)                                                                                                              tCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCggg                                                       >  2:1078274/1‑125 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGTGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCAt                            >  1:1138020/1‑150 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGaa                                                                                                            >  1:365025/1‑70 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGaa                                                                                                            <  2:365025/70‑1 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCaa                                  >  2:1248572/1‑144 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCaa                                  <  1:1248572/144‑1 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCAt                            >  1:246450/1‑150 (MQ=255)                                                                                                                cGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCAt                            >  1:213708/1‑150 (MQ=255)                                                                                                                     tCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCcagc                       <  1:955105/150‑1 (MQ=255)                                                                                                                         gCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGt                   <  1:644627/150‑1 (MQ=255)                                                                                                                          ccgcctcgatgccttcgaccaaCTGGCGGATAGCCTCG‑GGCTGGTCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTg                  <  2:393115‑M1/128‑1 (MQ=255)                                                                                                                              tCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAgc              <  2:202640/150‑1 (MQ=255)                                                                                                                                acacGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAgcgc            >  1:491951/1‑150 (MQ=255)                                                                                                                                 cacGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGcc           >  1:876880/1‑150 (MQ=255)                                                                                                                                 cacGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGAACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAgg                    <  2:1275466/141‑1 (MQ=255)                                                                                                                                 cacGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGAACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAgg                    >  1:1275466/1‑141 (MQ=255)                                                                                                                                  acGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCTAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGccc          >  2:181072/1‑150 (MQ=255)                                                                                                                                  acGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGccc          >  1:1116568/1‑150 (MQ=255)                                                                                                                                         cAGCCGGCTGGTGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGCCCGACGCTg   <  2:1138020/150‑1 (MQ=255)                                                                                                                                         cAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGCCCGACGCTg   <  2:213708/150‑1 (MQ=255)                                                                                                                                          aGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGCCCGACGCTgg  >  1:1152904/1‑150 (MQ=255)                                                                                                                                                |                                                                                                                                                 CACCGTTGCAGGCGCCCACACCTGTGCCTTGAAAGCGCCCCCGAACGGGCGCATTTGGGTATAGACTACTGGCTAAATTTACAGCTGCTGCACCGCGAGGTCCTTCATGTCCGAGTTCCAGCTCGTCACACGTTTCCAGCCGGCTGGCGACCAGCC‑CGAGGCTATCCGCCAGTTGGTCGAAGGCATCGAGGCGGGGCTGTCGCACCAGACGTTGCTCGGGGTGACCGGTTCGGGCAAGACCTTCAGCATTGCCAACGTCATCCAGCAGGTGCAGCGCCCGACGCTGG  >  NC_002947/2234827‑2235113

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.