New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2469275	33 (0.670)	4 (0.090)	4/234	NT	10.7%	coding (109/708 nt)	vacJ	lipoprotein VacJ
	?	NC_002947	= 2469297	36 (0.780)					coding (131/708 nt)	vacJ	lipoprotein VacJ

TGTTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTG  >  NC_002947/2469127‑2469424                                                                                                                                                     |                                                                                                                                                      tgtTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGATTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGCTcc                                                                                                                                                      <  1:617606/150‑1 (MQ=255)     gcgcTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTgg                                                                                                                                                  <  2:304358/150‑1 (MQ=255)                                gaAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGc                                                                                                                       >  2:735120/1‑150 (MQ=255)                                      tCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAAc                                                                                                                 <  1:181732/150‑1 (MQ=255)                                             gTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTTCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACAccc                                                                                                          >  2:515452/1‑150 (MQ=255)                                             gTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACAccc                                                                                                          >  1:607864/1‑150 (MQ=255)                                              tAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCAGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTAAACGACACCCt                                                                                                         >  2:533801/1‑150 (MQ=255)                                                 gATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACTCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAAcc                                                                                                                                     <  1:1124681/119‑1 (MQ=255)                                                 gATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAAcc                                                                                                                                     >  2:1124681/1‑119 (MQ=255)                                                      gTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCt                                                                                                 >  2:737666/1‑150 (MQ=255)                                                       tGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTa                                                                                                >  2:731207/1‑150 (MQ=255)                                                        gCCAGTGTGAGCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGACCCCTGGGAAGCGGTCTACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTAt                                                                                               <  1:1159356/150‑1 (MQ=255)                                                         ccAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATg                                                                                              >  1:1057247/1‑150 (MQ=255)                                                         ccAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACCACCCCCTCGACACCTAtc                                                                                              >  2:330664/1‑149 (MQ=255)                                                             tgtgATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCgggcggttgaccgcttcccagggatcttcctcg                                                                                                                      <  2:852614‑M1/122‑34 (MQ=255)                                                             tgtgATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCgggcggttgaccgcttcccagggatcttcctcg                                                                                                                      >  1:852614‑M1/1‑89 (MQ=255)                                                                  tCGAACGAGTCACCCCGGCCTGTGCCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAAc                                                                                     <  2:1031959/150‑1 (MQ=255)                                                                  tCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttc                                                                                                                          <  1:463828‑M2/113‑8 (MQ=255)                                                                  tCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttc                                                                                                                          >  2:463828‑M2/1‑106 (MQ=255)                                                                          gTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGCCAACCGCCCGATCTTCCGCTTCAACGACACCCCCGACACCTATGCCCTCAAACCCTTGGcc                                                                             >  2:300188/1‑150 (MQ=255)                                                                                cAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGc                                                                       <  2:80703/150‑1 (MQ=255)                                                                                   gCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCAt                                                                                  >  2:1166006/1‑136 (MQ=255)                                                                                   gCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCAt                                                                                  <  1:1166006/136‑1 (MQ=255)                                                                                    ccTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTAcc                                                                   <  1:731207/150‑1 (MQ=255)                                                                                     cTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCgggcggttgaccgcttcccagggatcttcctc                                                                                                                       <  1:224657‑M1/97‑33 (MQ=255)                                                                                     cTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCgggcggttgaccgcttcccagggatcttcctc                                                                                                                       >  2:224657‑M1/1‑65 (MQ=255)                                                                                                 cAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACAcc                                                                                                  <  1:518398/106‑1 (MQ=255)                                                                                                 cAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACAcc                                                                                                  >  2:518398/1‑106 (MQ=255)                                                                                                    cTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCcaca                                                   <  1:737666/150‑1 (MQ=255)                                                                                                     ttGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAg                                                  >  1:910289/1‑150 (MQ=255)                                                                                                         tgctgGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTcc                                              >  1:99703/1‑150 (MQ=255)                                                                                                          tctgGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCt                                             <  1:515452/149‑1 (MQ=255)                                                                                                           ctgGCGCCCGCGGCAGCCCCCGAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATTTTCCGCTACAACGACACACTCCACACCTATGCCCTCAAACCATTGGCCAAGGGCTCCCAGGCGGACACTCCACGTTTCCTc                                            >  2:131550/1‑150 (MQ=255)                                                                                                              gcgcCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGaa                                         >  2:190404/1‑150 (MQ=255)                                                                                                                    gcgGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGc                                   >  1:1208183/1‑150 (MQ=255)                                                                                                                     cgGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCa                                  <  2:607864/150‑1 (MQ=255)                                                                                                                                        cACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCaa               >  1:234067/1‑150 (MQ=255)                                                                                                                                           cGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcgatcaca                                        >  1:852614‑M2/1‑33 (MQ=255)                                                                                                                                           cGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcgatcaca                                        <  2:852614‑M2/122‑90 (MQ=255)                                                                                                                                            gAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacag                                                                <  1:224657‑M2/97‑66 (MQ=255)                                                                                                                                            gAGGAAGATCCCTGGGAAGCGGTCAACCGCCCgatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacag                                                                >  2:224657‑M2/1‑32 (MQ=255)                                                                                                                                             aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCaa                                                                                                                  >  2:648479/1‑46 (MQ=255)                                                                                                                                             aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCaa                                                                                                                  <  1:648479/46‑1 (MQ=255)                                                                                                                                             aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTgg          >  1:834182/1‑150 (MQ=255)                                                                                                                                             aGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTgg          <  2:99703/150‑1 (MQ=255)                                                                                                                                               gAAGATCgggcggttgaccgcttcccagggatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcga                                             >  2:463828‑M1/1‑7 (MQ=255)                                                                                                                                               gAAGATCgggcggttgaccgcttcccagggatcttcctcggtggcggcctgggtggctgccgcgggcgccagcagcaagctggcgcagacacaggcctgggtgactcgttcga                                             <  1:463828‑M1/113‑107 (MQ=255)                                                                                                                                                     cccTAGGGAGCGGTAAACCGCCCGATGTTCCGCTTGAACGAGCGTCTCGAAAGCTAAGCCCGTAAGCCATTGTCCAAATCCTACCAGTCGCTGACTCCACAAAAACAAGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGta  >  2:448586/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TGTTGCGCTTGCGGCCAAGAAATTCGATGGAGAAACATCTATGCGTAGGATCGGTGCCAGTGTGATCGAACGAGTCACCCAGGCCTGTGTCTGCGCCAGCTTGCTGCTGGCGCCCGCGGCAGCCACCCAGGCCGCCACCGAGGAAGATCCCTGGGAAGCGGTCAACCGCCCGATCTTCCGCTTCAACGACACCCTCGACACCTATGCCCTCAAACCATTGGCCAAGGGCTACCAGGCGGTCACTCCACAGTTCCTCGAAGATGGCATCCACAACATCTTTCGCAACCTGGGGGACGTG  >  NC_002947/2469127‑2469424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.