New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3214883 = | 40 (0.820) | 3 (0.070) | 3/232 | NT | 7.6% | coding (755/3129 nt) | mexD | multidrug RND transporter MexD |
? | NC_002947 | 3214934 = | 36 (0.790) | coding (806/3129 nt) | mexD | multidrug RND transporter MexD |
CTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCC > NC_002947/3214743‑3215032 | cTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCaa < 2:494731/150‑1 (MQ=255) aTTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGAt < 1:880067/150‑1 (MQ=255) ttCGCGGCCAGAACGTCCAGGTACGGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGCGCAGGAGCTGACCGCGACCCTGGCCGTTCAGGGCAC‑TCTCGACACCTCGGAAGCGTTGGCCGGGCACGTCCTGCGAGCCAACGCCGATg > 1:107837/1‑150 (MQ=255) cgGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCCACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTc < 1:1118698/150‑1 (MQ=255) cAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGc > 1:482565/1‑150 (MQ=255) gTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGc < 1:148374/150‑1 (MQ=255) ccAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGAAGGACAC‑TCTCGACACACCGCAAACGATAGAAGTGATCTGCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCt > 1:287251/1‑150 (MQ=255) cAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTg < 1:872640/150‑1 (MQ=255) aGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTgg > 1:1273682/1‑150 (MQ=255) ggccggcAGCTTCGGCAGCACGCCCGGTGCCAGCGAGAAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGCGACTGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGAtgt > 1:1042334/1‑150 (MQ=255) ccggcAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCATGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTgg > 1:816236/1‑150 (MQ=255) cggcAGCTTCGGCAGCACGCCCGGTGCAAGAGCGCAAGCGCTGAGCGCGATCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGgc < 2:530856/150‑1 (MQ=255) gtctggatggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctaccgatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGgcg < 2:859543‑M1/47‑1 (MQ=255) ggatggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctacagatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCa > 1:276156‑M1/100‑150 (MQ=255) ttCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCATGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg < 2:816236/150‑1 (MQ=255) atggcattggcgcccggcgccaactgcaccgcaccggccaccgccgggtggccgttcaggcgcgccgacaggttgtagttctcgctaccgatggccaTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATg > 1:859543‑M1/98‑150 (MQ=255) ggCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc < 2:1070421/150‑1 (MQ=255) gcagcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCa > 1:393190/1‑150 (MQ=255) gcaCGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCg < 2:311763/150‑1 (MQ=255) gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTc < 1:516492/115‑1 (MQ=255) gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTc > 2:516492/1‑115 (MQ=255) gCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGCACACGTCT‑GACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAg > 1:732490/1‑150 (MQ=255) ccGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGAGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCg > 1:535885/1‑150 (MQ=255) tGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCACCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa < 2:547999/150‑1 (MQ=255) cAGGGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCCGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTa < 1:252453/150‑1 (MQ=255) cGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACaa < 2:106230/150‑1 (MQ=255) gAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAAc < 2:482565/150‑1 (MQ=255) cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa > 2:793373/1‑140 (MQ=255) cAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGaa < 1:793373/140‑1 (MQ=255) aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGgcgcgc > 1:834857/1‑150 (MQ=255) aCCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCATTCGCCGGCATCGCCCTGCGCGCCAACCCTTATGGCTCCAGCGTGCGCCTGGGAGAGGTGGCGCGCATGTCCATCGGTAGCGAGAACTATAACCCGTTGgcgcgc > 1:1159995/1‑150 (MQ=255) cccTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACg < 2:834857/150‑1 (MQ=255) tGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTTCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGcc > 1:482544/1‑150 (MQ=255) gCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCcggc < 2:393190/150‑1 (MQ=255) c‑tctCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCcg < 2:809390/150‑1 (MQ=255) tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc > 1:986071/1‑91 (MQ=255) tctcGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGcc < 2:986071/91‑1 (MQ=255) cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc > 1:226591/1‑108 (MQ=255) cccGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTc < 2:226591/108‑1 (MQ=255) gTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGcc > 2:385216/1‑150 (MQ=255) cGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCAGGTGCGGTGCAGTTGGCGCCGGgcgc > 1:629468/1‑150 (MQ=255) aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt < 1:819626/150‑1 (MQ=255) aTCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAAt > 2:1059216/1‑150 (MQ=255) TGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATcc < 2:316178‑M1/150‑1 (MQ=255) | CTCGGCCATTCGCGGCCAGAACGTCCAGGTACCGGCCGGCAGCTTCGGCAGCACGCCCGGTGCCAGCGAGCAGGAGCTGACCGCGACCCTGGCCGTGCAGGGCAC‑TCTCGACACCCCGGAAGCGTTCGCCGGCATCGTCCTGCGCGCCAACCCCGATGGCTCCAGCGTCCGCCTGGGTGATGTGGCGCGCATGGCCATCGGTAGCGAGAACTACAACCTGTCGGCGCGCCTGAACGGCCACCCGGCGGTGGCCGGTGCGGTGCAGTTGGCGCCGGGCGCCAATGCCATCC > NC_002947/3214743‑3215032 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |