New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3985558 =	51 (1.040)	7 (0.150)	3/240	NT	13.3%	coding (798/855 nt)	PP_3513	LysR family transcriptional regulator
	?	NC_002947	3985582 =	42 (0.890)					coding (822/855 nt)	PP_3513	LysR family transcriptional regulator

TTACCTTACCCTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCC  >  NC_002947/3985411‑3985704                                                                                                                                                    |                                                                                                                                                       gcggcggggcggcgcgtggtgacaggctaaggggcggggtggggggaaggcttgtcgctgggtgtaccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCg                                                                                                                                                      >  2:1193386‑M1/148‑150 (MQ=255) gcggcggggcggcgcgtggtgacaggctaaggggcggggtggggggaaggcttgtcgctgggtgtaccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCg                                                                                                                                                      <  1:317493‑M1/3‑1 (MQ=255)  taccttaccCTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCgg                                                                                                                                                     <  1:1262310/150‑1 (MQ=255)     cttaccCTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑Gt                                                                                                                                              <  1:1070818/150‑1 (MQ=255)     cttaccCTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑Gt                                                                                                                                              <  1:1071328/150‑1 (MQ=255)         cccTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGTGCTACCCCCTGCGGGGGGATATTGATGTGGCCTGGTCGACCCGGC‑‑‑‑GTGcat                                                                                                                                          >  1:583938/1‑148 (MQ=255)          ccTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCtt                                                                                                                                         >  2:401696/1‑150 (MQ=255)          ccTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCtt                                                                                                                                         >  2:136176/1‑150 (MQ=255)          ccTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCtt                                                                                                                                         >  1:963145/1‑150 (MQ=255)           ctgctgGCGTTCGCCACTGGCGTGTTGTGGTGTGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTCGGGCACTAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTg                                                                                                                                        <  1:601666/150‑1 (MQ=255)            tgctgGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTgg                                                                                                                                       <  2:963145/150‑1 (MQ=255)             gctgGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTggg                                                                                                                                      <  2:813269/150‑1 (MQ=255)                 gAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGggccg                                                                                                                                  <  2:793701/150‑1 (MQ=255)                   gtgcGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGggccggc                                                                                                                                <  1:1202338/147‑1 (MQ=255)                    ttCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGggccggcc                                                                                                                               <  1:1051539/150‑1 (MQ=255)                    ttCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGggccggcc                                                                                                                               >  2:558981/1‑150 (MQ=255)                       gCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCggg                                                                                                                            <  1:429844/150‑1 (MQ=255)                          gctaaggggcggggtggggggaaggcttgtcgctgggtgtaccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGCCGGCGTGCCTTGGGgccggccg                                                                                                                              <  1:1108403‑M1/27‑1 (MQ=255)                          gctaaggggcggggtggggggaaggcttgtcgctgggtgtaccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGCCGGCGTGCCTTGGGgccggccg                                                                                                                              >  2:1108403‑M1/123‑149 (MQ=255)                           tACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAAt                                                                                                                        <  1:923258/150‑1 (MQ=255)                               cgGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGTTGGGTGGATATTGAGGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCt                                                                                                                    <  1:349816/150‑1 (MQ=255)                                  gTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGt                                                                                                                 <  2:465903/150‑1 (MQ=255)                                                    gCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGAt                                                                                                        >  2:1269682/1‑141 (MQ=255)                                                    gCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGAt                                                                                                        <  1:1269682/141‑1 (MQ=255)                                                          ggCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGtt                                                                                         <  1:154162/150‑1 (MQ=255)                                                          atctcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGtt                                                                                         <  1:538314/146‑1 (MQ=255)                                                           gcgcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGc                                                                                                               <  2:58514/127‑1 (MQ=255)                                                           gcgcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGc                                                                                                               >  1:58514/1‑127 (MQ=255)                                                            cgcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTtgt                                                                                       <  2:548062/150‑1 (MQ=255)                                                            cgcTCGTAAAACGGTTTGGCAACGAGCCGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTtgt                                                                                       <  1:334448/150‑1 (MQ=255)                                                             gcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACGGATGTTGGGGCAATAGt                                                                                          >  1:830191/1‑146 (MQ=255)                                                             gcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACGGATGTTGGGGCAATAGt                                                                                          <  2:830191/146‑1 (MQ=255)                                                             gcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGt                                                                                          <  2:243574/146‑1 (MQ=255)                                                             gcTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGt                                                                                          >  1:243574/1‑146 (MQ=255)                                                               tGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCGCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGTGGTCGGCCGGGCAATGGCGGGTGCGACAGATGTTGGGGCAATAGTtgagaa                                                                                    >  2:538314/1‑146 (MQ=255)                                                                 gTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGc                                                                                  <  1:558981/150‑1 (MQ=255)                                                                   ccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCaa                                                                                                                         >  1:812137‑M1/82‑109 (MQ=255)                                                                   ccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCaa                                                                                                                         >  1:812109‑M1/82‑109 (MQ=255)                                                                   ccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCaa                                                                                                                         <  2:812109‑M1/28‑1 (MQ=255)                                                                   ccggttgttgtgtctgggcgcacttcaagttcgggcaggcgacacaactattgccccaacatctgtcgcaccagccattgcCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCaa                                                                                                                         <  2:812137‑M1/28‑1 (MQ=255)                                                                    aaaCGGTTTGGTAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGt                                                                                                                 >  1:381800/1‑116 (MQ=255)                                                                    aaaCGGTTTGGTAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGt                                                                                                                 <  2:381800/116‑1 (MQ=255)                                                                    aaaCGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTg                                                                               >  1:1040822/1‑150 (MQ=255)                                                                      aCGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGcc                                                                             <  2:1040822/150‑1 (MQ=255)                                                                          tttGGCAACGAGCTGGGGGAGTTGCAGATAGCGGGCTAGCCCCGGCCGGTGGATATGGATGTGGCCTGGTCCAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGTAATGGCTGGTGCGACAGAGGTTGCGGCAAAAGTTGTGTCCCCTGCCCGaa                                                                         <  2:583938/150‑1 (MQ=255)                                                                           ttGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAAc                                                                        <  1:1219076/150‑1 (MQ=255)                                                                                                    gATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACaacaac                                               <  2:603002/150‑1 (MQ=255)                                                                                                         cGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTa                                          >  2:345640/1‑150 (MQ=255)                                                                                                         cGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTa                                          <  1:401696/150‑1 (MQ=255)                                                                                                            gCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGTAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTacac                                       >  2:923321/1‑150 (MQ=255)                                                                                                                 ccccGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTg                                                                                                    >  2:362030/1‑84 (MQ=255)                                                                                                                 ccccGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTg                                                                                                    <  1:362030/84‑1 (MQ=255)                                                                                                                 ccccGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGc                                  >  2:581764/1‑150 (MQ=255)                                                                                                                     ggcggGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACa                              <  1:136176/150‑1 (MQ=255)                                                                                                                                   gATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCAc                >  2:1016285/1‑150 (MQ=255)                                                                                                                                       tgGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCccccccccccc            >  1:486344/1‑149 (MQ=255)                                                                                                                                       caccagccattgcCCGGC‑‑‑‑CGGCCCCAAGGCACGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCaccccc            <  1:110600‑M1/137‑2 (MQ=255)                                                                                                                                         gCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGcc          >  2:1123654/1‑150 (MQ=255)                                                                                                                                          ccTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGc                                                                                  <  2:799828/77‑1 (MQ=255)                                                                                                                                          ccTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGc                                                                                  >  1:799828/1‑77 (MQ=255)                                                                                                                                              gTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTa     >  1:880253/1‑150 (MQ=255)                                                                                                                                                 gAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGcc  >  1:97844/1‑150 (MQ=255)                                                                                                                                                 gAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGcc  >  2:1253098/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                       TTACCTTACCCTGCTGGAGTTCGCCGTACGCGGGTTTGGCTGGGCCGAGCTGCCCAGGGCGCTGGTAAAACGGTTTGGCAACGAGCTGGTGGAGTTGCAGATAGCGGGCTACCCCCGGCGGGTGGATATGGATGTGGCCTGGTCGAGCCGGC‑‑‑‑GTGCCTTGGGGCCGGCCGGGCAATGGCTGGTGCGACAGATGTTGGGGCAATAGTTGTGTCGCCTGCCCGAACTTGAAGTGCGCCCAGACACAACAACCGGTACACCCAGCGACAAGCCTTCCCCCCACCCCGCCCCTTAGCC  >  NC_002947/3985411‑3985704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.