New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4560816	50 (1.020)	5 (0.100)	5/244	NT	9.4%	coding (777/1404 nt)	PP_4048	hypothetical protein
	?	NC_002947	= 4560831	48 (1.000)					coding (762/1404 nt)	PP_4048	hypothetical protein

ATGCGCAGCGATTGTCGGCGACGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAC  >  NC_002947/4560669‑4560963                                                                                                                                                    |                                                                                                                                                    aTGCGCAGAGATTCTAGGCGAGGGGGGCACGGGCGGGCCGACCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTg                                                                                                                                                   >  2:633597/1‑150 (MQ=255)                      cGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTc                                                                                                                              >  1:524148/1‑150 (MQ=255)                       gTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCTGCCCGCGCAGGTTGCGCAggccggggt                                                                                                                             >  2:1041838‑M2/1‑141 (MQ=255)                          ggCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTg                                                                                                                          <  2:1030102/150‑1 (MQ=255)                             aCGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCACCCTGCGCGGGCAGGTCGCTGGcc                                                                                                                       >  2:126367/1‑150 (MQ=255)                             aCGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGcc                                                                                                                       >  1:278612/1‑150 (MQ=255)                                      ccGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCa                                                                                                                <  2:268492/148‑1 (MQ=255)                                      ccGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCa                                                                                                                >  1:268492/1‑148 (MQ=255)                                                ccTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGc                                                                                                              >  2:761752/1‑140 (MQ=255)                                                ccTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGc                                                                                                              <  1:761752/140‑1 (MQ=255)                                                 cTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTGCAGCGCCTTGGCCAg                                                                                                   >  1:768448/1‑150 (MQ=255)                                                  tCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGc                                                                                                  >  1:225987/1‑150 (MQ=255)                                                       acgcgCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTTATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCGCCAGCGCCTGGGCCAGCCTGGc                                                                                             >  2:500685/2‑150 (MQ=255)                                                                                  gATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCa                                                                                                                                               >  1:1201429/1‑73 (MQ=255)                                                                                  gATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCa                                                                                                                                               <  2:1201429/73‑1 (MQ=255)                                                                                  gATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGAt                                                                  >  2:725908/1‑150 (MQ=255)                                                                                       cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTTCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTCGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTccc                                                             >  1:1233918/1‑150 (MQ=255)                                                                                       cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCCAGTCGCTGGCCTTCTCCAGCACCTTGGTCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTccc                                                             >  2:364059/1‑150 (MQ=255)                                                                                       cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             >  2:254103/1‑134 (MQ=255)                                                                                       cAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             <  1:254103/134‑1 (MQ=255)                                                                                         gagGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGc                                                           >  2:230617/1‑150 (MQ=255)                                                                                           ggTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  1:230617/150‑1 (MQ=255)                                                                                           ggTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  2:1027871/150‑1 (MQ=255)                                                                                                cccGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCAt                                                    >  2:1165382/1‑150 (MQ=255)                                                                                                 ccGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCcgcgcaggttgcgcaggccggg                                                                                                                               >  1:590139‑M1/1‑52 (MQ=255)                                                                                                 ccGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCcgcgcaggttgcgcaggccggg                                                                                                                               <  2:590139‑M1/74‑23 (MQ=255)                                                                                                        gCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGc                                            >  2:25777/1‑150 (MQ=255)                                                                                                            tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:1156976/1‑150 (MQ=255)                                                                                                            tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:821181/1‑150 (MQ=255)                                                                                                            tCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACgg                                        >  1:389449/1‑150 (MQ=255)                                                                                                              aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             <  1:957540/111‑1 (MQ=255)                                                                                                              aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAgc                                                                             >  2:957540/1‑111 (MQ=255)                                                                                                              aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         <  1:1230371/147‑1 (MQ=255)                                                                                                              aTGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         >  2:1230371/1‑147 (MQ=255)                                                                                                                   cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCcgcgcaggttgcgcaggccggggtgc                                                                                                                           <  2:544674‑M1/60‑27 (MQ=255)                                                                                                                   cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCcgcgcaggttgcgcaggccggggtgc                                                                                                                           >  1:544674‑M1/1‑34 (MQ=255)                                                                                                                   cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGc                                                                                                                        >  2:603857/1‑63 (MQ=255)                                                                                                                   cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGc                                                                                                                        <  1:603857/63‑1 (MQ=255)                                                                                                                   cATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGaa                                 <  1:510173/150‑1 (MQ=255)                                                                                                                    aTGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAAc                                >  2:909362/1‑150 (MQ=255)                                                                                                                      gggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTg                              >  2:425002/1‑150 (MQ=255)                                                                                                                       ggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         <  1:475438/138‑1 (MQ=255)                                                                                                                       ggCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACg                                         >  2:475438/1‑138 (MQ=255)                                                                                                                        gCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgcg                            >  2:959114/1‑150 (MQ=255)                                                                                                                         cTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTa                                    >  2:1183445/1‑141 (MQ=255)                                                                                                                         cTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTa                                    <  1:1183445/141‑1 (MQ=255)                                                                                                                            cGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTc                        >  1:1263891/1‑150 (MQ=255)                                                                                                                            cGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTc                        <  1:959114/150‑1 (MQ=255)                                                                                                                              gCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCTGCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgc                             >  1:1185603/1‑143 (MQ=255)                                                                                                                              gCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTgc                             <  2:1185603/143‑1 (MQ=255)                                                                                                                                ttttGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATg                    <  1:1165382/150‑1 (MQ=255)                                                                                                                                          gCACCCCGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatg                                                                                                    <  2:544674‑M2/60‑35 (MQ=255)                                                                                                                                          gCACCCCGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatg                                                                                                    >  1:544674‑M2/1‑26 (MQ=255)                                                                                                                                           cACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCAt                                                                         >  2:490370/1‑86 (MQ=255)                                                                                                                                           cACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCAt                                                                         <  1:490370/86‑1 (MQ=255)                                                                                                                                            aCCCCGGCCtgcgcaacctgcgcgggcaggggtgcatgcgcaaaagccggagcccatggccatgagtgctgggcgggtgacctctggcatcggcatgcgcccacgttaccttgagcggtccgagggtgcgctcggcccgcccgtgcccac        >  2:1041838‑M1/1‑9 (MQ=255)                                                                                                                                             ccccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         <  2:545686/100‑1 (MQ=255)                                                                                                                                             ccccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCaa                                                         >  1:545686/1‑100 (MQ=255)                                                                                                                                              cccGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatggccatgagtgctgggcgg                                                                                  <  2:590139‑M2/74‑53 (MQ=255)                                                                                                                                              cccGGCCTGCGCAACCTGCGCGggccggggtgcatgcgcaaaagccggagcccatggccatgagtgctgggcgg                                                                                  >  1:590139‑M2/1‑22 (MQ=255)                                                                                                                                               ccGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCAcc     <  2:1263891/150‑1 (MQ=255)                                                                                                                                                  gCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAc  <  2:1233918/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATGCGCAGCGATTGTCGGCGACGTGGGCACGGGCGGGCCGAGCGCACCCTCGGACCGCTCAAGGTAACGTGGGCGCATGCCGATGCCAGAGGTCACCCGCCCAGCACTCATGGCCATGGGCTCCGGCTTTTGCGCATGCACCCCGGCCTGCGCAACCTGCGCGGGCAGGTCGCTGGCCTGCTCCAGCACCTTGGCCAGCCTGGCATCGAGCTGCATCAGCGCATGCGGGATTTCCCGCAAGGCATGCACCTGCACGGCGTAGAACTGCGCTTCCATGGCCTGCAACCGCACCAAC  >  NC_002947/4560669‑4560963

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.