New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4954392	41 (0.840)	3 (0.060)	3/244	NT	7.0%	coding (85/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator
	?	NC_002947	= 4954427	40 (0.840)					coding (50/1692 nt)	PP_4363	two‑component system sensor histidine kinase/response regulator

CCAATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACAT  >  NC_002947/4954251‑4954540                                                                                                                                              |                                                                                                                                                     ccaATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa                                                                                                                                              >  1:810128/1‑150 (MQ=255) ccaATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa                                                                                                                                              <  1:581541/150‑1 (MQ=255)   aaTGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACg                                                                                                                                            >  2:793111/1‑150 (MQ=255)        cTTGATCTGCCGCGCCGCCTCGAAGCCATTCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTg                                                                                                                                       >  1:560420/1‑150 (MQ=255)         ttGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc                                                                                                                                      <  2:1097551/150‑1 (MQ=255)         ttGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc                                                                                                                                      <  2:505408/150‑1 (MQ=255)                        gccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGatcgtgc                                                                                                                       <  2:810128/150‑7 (MQ=255)                        gccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGa                                                                                                                       <  2:1262569/150‑1 (MQ=255)                         ccTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGAt                                                                                                                      <  2:1001956/150‑1 (MQ=255)                          cTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATc                                                                                                                     >  1:819202/1‑150 (MQ=255)                              aaGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAca                                                                                                                 <  1:35701‑M2/150‑3 (MQ=255)                               aGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcag                                                                                                                >  2:362352‑M2/1‑147 (MQ=255)                                  catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa                                                                                                                                              <  2:1079888/117‑1 (MQ=255)                                  catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCa                                                                                                                                              >  1:1079888/1‑117 (MQ=255)                                  catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc                                                                                                                                      <  1:835862/125‑1 (MQ=255)                                  catccatGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTgc                                                                                                                                      >  2:835862/1‑125 (MQ=255)                                   atccatGACCGGCATCAGGGCGTCAAGCAAAAGCCTTCGAGGGCGCTGCGCGGGGTACAGCCCTACCGCCTCCTCGCAGCTTCGACGGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACt                                                                                                            >  1:1254311/1‑150 (MQ=255)                                      catGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTc                                                                                                         <  1:1270150/150‑1 (MQ=255)                                        tGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGACGTTGGAGGTGTAGCGCGACCGCCTGCTCGCCGTTTTTATCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCtt                                                                                                       <  1:927156/150‑1 (MQ=255)                                         gACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTc                                                                                                      <  1:1049506/150‑1 (MQ=255)                                           ccGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTAGCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggta                                                                                                    <  1:338055‑M1/150‑51 (MQ=255)                                              gCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATGCGCCCGGGCAGAAGGCGATCGACAGCACTGTCTTCGGCGa                                                                                                 >  1:66631/1‑150 (MQ=255)                                                    gggCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCa                                                                                           >  2:987798/1‑150 (MQ=255)                                                      gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa                                                                                                                   >  2:1228347/1‑124 (MQ=255)                                                      gCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGa                                                                                                                   <  1:1228347/124‑1 (MQ=255)                                                         tCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGtt                                                                                      >  1:505046/1‑150 (MQ=255)                                                            agcagcACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAAc                                                                                   <  2:819202/150‑1 (MQ=255)                                                              cagcaCCAGTTGCGGGCGCCGCTCGAGGTACCGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGCTCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGc                                                                                 <  2:742617/150‑1 (MQ=255)                                                                gcaCCAGTTGCGGGAGCCACTCGAGGTACCGCGCTACCGTCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCt                                                                               <  2:66631/150‑1 (MQ=255)                                                                  aCCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGt                                                                             >  2:910465/1‑150 (MQ=255)                                                                     cgTTGCGGGCGCCGCTCGCGGTACAGCGCTACCGCCTGCTCCCCGCTTTCTGGGGTGAATACCTGATGCCCCTGGCGCCGCTCGCGCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcg                                                                          <  1:199109/149‑1 (MQ=255)                                                                          cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc                                                                       <  1:1039936/148‑1 (MQ=255)                                                                          cGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTcggcc                                                                       >  2:1039936/1‑148 (MQ=255)                                                                             gcgcCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCAt                                                                  >  2:1149521/1‑150 (MQ=255)                                                                                ccgcTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACTAGCACGGTTAACGCCTGTTCGGCCGGCATGTc                                                               <  2:1075770/150‑1 (MQ=255)                                                                                          tACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccagg                                                                                                               >  1:1215658‑M1/1‑53 (MQ=255)                                                                                          tACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccagg                                                                                                               <  2:1215658‑M1/92‑40 (MQ=255)                                                                                                    ccGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                           <  1:688767/150‑1 (MQ=255)                                                                                                           cTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttt                                    >  1:1011392/1‑150 (MQ=255)                                                                                                             cGCCGTTTTCAGCGGTGAATACCTGCTGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGtttttt                                  <  1:1149521/150‑2 (MQ=255)                                                                                                               ccGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGa                                <  2:505046/150‑1 (MQ=255)                                                                                                                               aTACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                           >  1:743698/1‑123 (MQ=255)                                                                                                                               aTACATGATTCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGaa                                           <  2:743698/123‑1 (MQ=255)                                                                                                                                tACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcgctagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccgg               <  1:338055‑M2/150‑101 (MQ=255)                                                                                                                                  ccTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAAt             <  1:910465/150‑1 (MQ=255)                                                                                                                                   cTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATc            >  1:3070/1‑150 (MQ=255)                                                                                                                                       tGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCTACCAGCACGGTTAACGCTTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTgc        <  1:793111/150‑1 (MQ=255)                                                                                                                                           ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta                                                              >  1:1215658‑M2/1‑39 (MQ=255)                                                                                                                                           ccTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGAcaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgta                                                              <  2:1215658‑M2/92‑54 (MQ=255)                                                                                                                                            cTGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccggtcatggatggct   >  2:362352‑M1/1‑3 (MQ=255)                                                                                                                                             tGtcgatcgccttctgcttgcgcagatcgtgcgtcgccaggggcatcaggtattcaccgctgaaaacggcgagcaggcggtagcgctgtacctcgagcggcgcccgcaactggtgctgctggacgccctgatgccggtcatggatggctt  <  1:35701‑M1/150‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     CCAATGCCTTGATCTGCCGCGCCGCCTCGAAGCCATCCATGACCGGCATCAGGGCGTCCAGCAGCACCAGTTGCGGGCGCCGCTCGAGGTACAGCGCTACCGCCTGCTCGCCGTTTTCAGCGGTGAATACCTGATGCCCCTGGCGACGCACGATCTGCGCAAGCAGAAGGCGATCGACAGCACTGTCTTCGGCGACCAGCACGGTTAACGCCTGTTCGGCCGGCATGTCGGCGCTCAACTGATATCGAAGAGTTTTTCGAAATTGGAGATGGCGAGAATCTTGCGCACAT  >  NC_002947/4954251‑4954540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.