New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5237563 =	39 (0.800)	4 (0.090)	4/232	NT	10.9%	coding (346/348 nt)	PP_5700	hypothetical protein
	?	NC_002947	5237620 =	29 (0.640)					coding (32/387 nt)	PP_4614	hypothetical protein

CCACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTG  >  NC_002947/5237415‑5237712                                                                                                                                                     |                                                                                                                                                      ctgccgtcgaggttggcaatgctcaggttcacccggtattcgggggcgaacgcagcactgattcgttcgaatgggttgttcatggtcttgcttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTg                                                                                                                                                      <  1:618863‑M1/2‑1 (MQ=255)  tgccgtcgaggttggcaatgctcaggttcacccggtattcgggggcgactgaatcactgattcgttcgaatgggttgttcatggtcttgcttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGa                                                                                                                                                     <  1:415411‑M1/3‑1 (MQ=255)    ccgatctaTTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCAAGAGCTGGAGCACTTCTACGGTTTGTGGCTTAGCTAACTCGGCTCCTTGGAACTGAGTGACCCGGACGCCTGATc                                                                                                                                                   <  1:863617/143‑1 (MQ=255)       aCCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGc                                                                                                                                                <  1:955421/150‑1 (MQ=255)         cGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCac                                                                                                                                              >  2:38396/1‑149 (MQ=255)         cGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCaa                                                                                                                                              >  1:15737/1‑150 (MQ=255)           aTTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATg                                                                                                                                            <  1:1059352/150‑1 (MQ=255)           aTTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATg                                                                                                                                            <  1:14667/150‑1 (MQ=255)            tttCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCgagatcgg                                                                                                                                           >  2:863617/1‑143 (MQ=255)            tttACGTGGCCCACCCTGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCACTCACGCGCTGGAGCACTTCTACGGCATGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGc                                                                                                                                           <  2:468638/150‑1 (MQ=255)                 gTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGTAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAAc                                                                                                                                      <  1:548993/150‑1 (MQ=255)                       cacaCCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCgg                                                                                                                                >  2:433979/1‑150 (MQ=255)                            cGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTg                                                                                                                           >  2:1177390/1‑150 (MQ=255)                                cccggtattcgggggcgaatgcagcactgattcgttcgaatgggttgttcatggtcttgcttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGATCGGCAATGCAAAACGCCCGGCCTTGAGcc                                                                                                                       <  1:523583‑M1/33‑1 (MQ=255)                                aGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGcc                                                                                                                       <  2:635786/150‑1 (MQ=255)                                  ttCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCgg                                                                                                                     <  2:917423/150‑1 (MQ=255)                                        ggACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGttt                                                                                                               <  2:278126/150‑1 (MQ=255)                                        ggACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAAGCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGttt                                                                                                               <  2:413680/150‑1 (MQ=255)                                         gACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCt                                                                                                                                                       <  1:843451/109‑1 (MQ=255)                                         gACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCt                                                                                                                                                       >  2:843451/1‑109 (MQ=255)                                               gCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTtg                                                                                                        >  2:777441/1‑150 (MQ=255)                                                  gTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGc                                                                                                     <  1:777441/150‑1 (MQ=255)                                                  gTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGc                                                                                                     <  2:1040291/150‑1 (MQ=255)                                                     gACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGTACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGa                                                                                                  >  2:31989/1‑150 (MQ=255)                                                        ggTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTACGCAGCAAGCGCGGCGCCTTGGAACTGAATGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCa                                                                                               >  1:347576/1‑150 (MQ=255)                                                         gTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCaa                                                                                              <  2:1155791/150‑1 (MQ=255)                                                          ctgattcgttcgaatgggttgttcatggtcttgcttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAAt                                                                                             >  2:523583‑M1/92‑150 (MQ=255)                                                                caccaAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCt                                                                                       <  2:1118878/150‑1 (MQ=255)                                                                caccaAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCt                                                                                       <  1:1177390/150‑1 (MQ=255)                                                                                    tGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCTGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTcc                                                                   <  1:922676/150‑1 (MQ=255)                                                                                       aGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGt                                                                <  1:433979/150‑1 (MQ=255)                                                                                            ttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccctTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGgc                                                                                          <  1:1121614‑M1/62‑1 (MQ=255)                                                                                            ttctgcggtgagtgatgcagaggttgaccggacgttcgcatgttggttcagcgccatTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGgc                                                                                          >  2:1121614‑M1/58‑119 (MQ=255)                                                                                                aCGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTg                                                       <  2:15737/150‑1 (MQ=255)                                                                                                     aaGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGTACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCAtca                                                  <  1:31989/150‑1 (MQ=255)                                                                                                         tGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCAtcactca                                              >  1:334442/1‑150 (MQ=255)                                                                                                           cgcAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCAcc                                            <  2:334442/150‑1 (MQ=255)                                                                                                                  aGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCaa                                                             <  1:847244/126‑1 (MQ=255)                                                                                                                  aGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCaa                                                             >  2:847244/1‑126 (MQ=255)                                                                                                                           ccTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCAt                            <  1:230955/150‑1 (MQ=255)                                                                                                                             ttGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGa                          >  2:618863/1‑150 (MQ=255)                                                                                                                             ttGAAACTGATTGACCCGGACGCCGGAGCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGa                          >  2:374882/1‑150 (MQ=255)                                                                                                                                       gTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                >  1:142760/1‑150 (MQ=255)                                                                                                                                           cccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa            <  2:347576/150‑1 (MQ=255)                                                                                                                                           cccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaa            >  2:49917/1‑150 (MQ=255)                                                                                                                                            ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                >  2:37595/1‑145 (MQ=255)                                                                                                                                            ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCAtt                <  1:37595/145‑1 (MQ=255)                                                                                                                                            ccGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTcgaac           <  2:975351/150‑1 (MQ=255)                                                                                                                                                aCGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAAt       <  1:49917/150‑1 (MQ=255)                                                                                                                                                     TGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGtg  >  2:343945‑M1/1‑150 (MQ=255)                                                                                                                                                     |                                                                                                                                                      CCACCAACCGATTTCCGTGACCCACACCGCCAGTTCGCTGGACCAGGCAGTCGACGGTGCCGCCACCAAGCTCAATCACGCGCTGGAGCACTTCTACGGCAAGCTGCGCAGCAAGCGCGGCGCCTTGGAACTGAGTGACCCGGACGCCTGATCGGCAATGCAAAACGCCCGGCCTTGAGCCGGGCGTTTTCGTTTGTGCCGATCAATGGCGCTGAACCAACATGCGAACGTCCGGTCAACCTCTGCATCACTCACCGCAGAAGCAAGACCATGAACAACCCATTCGAACGAATCAGTG  >  NC_002947/5237415‑5237712

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.