| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 41794 | 27 (0.550) | 5 (0.110) | 3/224 | NT | 16.3% | intergenic (+36/‑263) | oprP/PP_0039 | porin P/hypothetical protein |
| ? | NC_002947 | = 41803 | 27 (0.610) | intergenic (+45/‑254) | oprP/PP_0039 | porin P/hypothetical protein | |||||
AACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCATGGTGGCCGTGCAAGCAAAT > NC_002947/41666‑41952 | aaCTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTgattccggcttt < 1:663044‑M2/150‑13 (MQ=255) aaCGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCt < 2:663044/150‑1 (MQ=255) tGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAg < 2:1026255/150‑1 (MQ=255) ccGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATc < 1:952248/150‑1 (MQ=255) aacaacGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCt > 1:1026041/1‑135 (MQ=255) aacaacGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCt < 2:1026041/135‑1 (MQ=255) aacGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATgg > 1:855748/1‑150 (MQ=255) aaCACCGTGGGCGACGACAGCGGCAATGACATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGc > 2:252763/1‑140 (MQ=255) aaCACCGTGGGCGACGACAGCGGCAATGACATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGc < 1:252763/140‑1 (MQ=255) cGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGc < 1:698625/135‑1 (MQ=255) cGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGc > 2:698625/1‑135 (MQ=255) gCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTAc < 1:769128/150‑1 (MQ=255) gacgacAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTgcttccggctttcttac > 1:1283136‑M2/1‑93 (MQ=255) gacgacAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTgcttccggctttctcac < 2:1283136‑M2/110‑18 (MQ=255) tCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCCTGCCGTTCCCTTCTCCTACCTGCTTTCGCTTACCGATGAc > 2:426023/1‑150 (MQ=255) ccGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCtt > 1:1220634/1‑150 (MQ=255) ccGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCACGTTGA‑GCgcttccggctttctcacgtcagactgatgaga > 1:320882‑M2/1‑67 (MQ=255) ccGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCAC‑GTTGAGCgcttccggctttctcacgtcagactgatgaga < 2:320882‑M2/99‑33 (MQ=255) gCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTCTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACAGGCTTTCACTTAACCTTGACAGctctgactaaa > 2:204994/1‑143 (MQ=255) tctGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAAt < 2:553289/150‑1 (MQ=255) tGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCt > 2:703692/1‑150 (MQ=255) tCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATg < 2:651429/83‑1 (MQ=255) tCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATg < 2:651364/83‑1 (MQ=255) tCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATg > 1:651429/1‑83 (MQ=255) tCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATg > 1:651364/1‑83 (MQ=255) tcaGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGcc > 1:1235021/1‑150 (MQ=255) gACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCaa < 2:983249/117‑1 (MQ=255) gACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCaa > 1:983249/1‑117 (MQ=255) gACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCgg < 2:855748/150‑1 (MQ=255) cGGAAGCGG‑TCAACGTGCTTCAGGCTTACCAGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCAgggtt > 2:377741/1‑149 (MQ=255) cGGAAGCGC‑TCAACGTgcttccggctttctcacgtcagactgatgagagggatcagaagacgtattgcaggcgg < 2:1184549‑M2/74‑59 (MQ=255) cGGAAGCGC‑TCAACGTgcttccggctttctcacgtcagactgatgagagggatcagaagacgtattgcaggcgg > 1:1184549‑M2/1‑16 (MQ=255) cGGAAGCGC‑TCAACGTgcttccggctttctcacgccagactgccgagcgggttgcgaagacgtattgcaggcgggtcacgatggcattgccgctgtcgtcgcccacggtgttctcgttgttgtcggtgcgcacgttgatgtagttggcac < 1:349949‑M2/150‑135 (MQ=255) cGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCAtggtg > 1:565054/1‑150 (MQ=255) gc‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTAATGTGATTGCCGCGTCGGGCTTTGCATGGTGGCCGTgc < 1:426023/150‑1 (MQ=255) aaCGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCATGGTGGCCGTgcaagc > 2:1234998/1‑150 (MQ=255) tGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCATGGTGGCCGTGCAAGCAAAt < 2:565054/150‑1 (MQ=255) | AACTACATCAACGTGCGCACCGACAACAACGAGAACACCGTGGGCGACGACAGCGGCAATGCCATCGTGACCCGCCTGCAATACGTCTTCTGATCCCTCTCATCAGTCTGACGTGAGAAAGCCGGAAGCGC‑TCAACGTGCTTCCGGCTTTCCTGTTTCTGGAGGTGATCAAGCATGGAGCGCCCTCCTCCTACCTGCTTTCGCTTACCGATGACCGCTCTTGCCAAAGCTCGGCGAATCTGATGTGATTGCCGCGTCGGGCTTTGCATGGTGGCCGTGCAAGCAAAT > NC_002947/41666‑41952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |