New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	80983 =	39 (0.800)	6 (0.130)	5/230	NT	14.0%	intergenic (+40/‑94)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein
	?	NC_002947	81062 =	38 (0.840)					intergenic (+119/‑15)	tsaC/PP_5425	threonylcarbamoyl‑AMP synthase/hypothetical protein

AACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGG  >  NC_002947/80916‑81203                                                                                                                                                   |                                                                                                                                              aaCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGaaa                                                                                                                                            >  1:969126/1‑150 (MQ=255)  aCCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAg                                                                                                                                           <  2:286061/150‑1 (MQ=255)            tCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGcac                                                                                                                                 >  1:329988/1‑150 (MQ=255)               ttCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGAGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGGCACGCACATg                                                                                                                              >  1:363298/1‑150 (MQ=255)                    ccGGGTTGATACCAGTCCACAGGCCTGGCTCGGGACTCGGGCCTCTGTGGGGGCGGGCGCGCCCGCGAAGAATACACCGCCGGGCCAGGCCCGGGCTTCGCCCGTGTTAGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGc                                                                                                                         <  2:363298/150‑1 (MQ=255)                    ccGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGAc                                                                                                                            >  2:217848/1‑147 (MQ=255)                    ccGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGAc                                                                                                                            <  1:217848/147‑1 (MQ=255)                       ggTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCt                                                                                                                      <  2:969126/150‑1 (MQ=255)                        gTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAgt                                                                                                                                          >  1:432107/1‑129 (MQ=255)                        gTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAgt                                                                                                                                          <  2:432107/129‑1 (MQ=255)                          tGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                                                                                                   >  1:832060/1‑150 (MQ=255)                                 aaTCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACg                                                                                                            >  2:206329/1‑150 (MQ=255)                                    ccACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                                                                                                         <  2:329988/150‑1 (MQ=255)                                        aGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGATTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTc                                                                                                     >  2:943787/1‑150 (MQ=255)                                                    ggACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCt                                                                                         >  1:492436/1‑150 (MQ=255)                                                      aCTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                                                                                       <  1:206329/150‑1 (MQ=255)                                                        tCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                                                                                                   >  2:1264742/1‑120 (MQ=255)                                                        tCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCg                                                                                                                   <  1:1264742/120‑1 (MQ=255)                                                            gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAc                                                                                 >  1:550979/1‑150 (MQ=255)                                                            gCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTACGTCACCGGAAAGGGCTTTGCCCGTGTTCGCGGGCATGCACGATCCCGAAAGTGTCGCGCACTTGGCTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAAc                                                                                 >  1:989013/1‑150 (MQ=255)                                                                      GAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCg                                                                       <  1:146088‑M1/150‑1 (MQ=255)                                                                       gGCGGGCGCGCCCGCGAAGAATACAGCTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACAGGACTGCCCTTCGCAGCACGTTTGGTCGTGATCATTGCTGTGGTAATGAGTTCTTCGa                                                                      >  2:531462‑M1/2‑150 (MQ=255)                                                                            gcatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                                                                                       <  1:1057295‑M2/57‑1 (MQ=255)                                                                            gcatgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTAt                                                                                       >  2:1057295‑M2/72‑128 (MQ=255)                                                                            GCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGTGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAgg                                                                 >  1:211027‑M1/1‑150 (MQ=255)                                                                              atgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                                                                                                         <  1:466563‑M2/39‑1 (MQ=255)                                                                              atgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGttt                                                                                                         >  2:466563‑M2/70‑108 (MQ=255)                                                                              atgcccgcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCg                                                               >  1:762949‑M2/70‑150 (MQ=255)                                                                                    gcgaacacgggcgaagcccgtgcctggcaccgagttgtattcttcgcgggcgcgcccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGAttttt                                                         <  2:762949‑M2/87‑1 (MQ=255)                                                                                          aaTACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGatgatg                                                                                            <  1:1068483/109‑1 (MQ=255)                                                                                          aaTACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGatgatg                                                                                            >  2:1068483/1‑109 (MQ=255)                                                                                          aaTACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTg                                                   >  1:1274309/1‑150 (MQ=255)                                                                                             aCAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGCGGCGATTTTTGAACTGACg                                                <  1:943787/150‑1 (MQ=255)                                                                                             aCAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACg                                                <  2:146088/150‑1 (MQ=255)                                                                                               aaCTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAgg                                                                 <  2:378473/131‑1 (MQ=255)                                                                                               aaCTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAgg                                                                 >  1:378473/1‑131 (MQ=255)                                                                                                 cTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGccc                                            >  1:1166136/1‑150 (MQ=255)                                                                                                    ggTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGa                                                                   >  2:111019/1‑124 (MQ=255)                                                                                                    ggTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGa                                                                   <  1:111019/124‑1 (MQ=255)                                                                                                       gCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGc                                      >  2:490571/1‑150 (MQ=255)                                                                                                               cGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGCTTTTTTAACTGACGGCCCGCAAGCCCAAGGCa                              >  1:456379/1‑150 (MQ=255)                                                                                                                gggCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACt                                                    >  2:687151/1‑127 (MQ=255)                                                                                                                gggCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACt                                                    <  1:687151/127‑1 (MQ=255)                                                                                                                 ggCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATg                                                                                      >  1:239458/1‑92 (MQ=255)                                                                                                                 ggCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATg                                                                                      <  2:239458/92‑1 (MQ=255)                                                                                                                    ttCGCCAGCGTTCGCGGGCATGTCCGCTCCCGAAAGTGGCCCGCACATGACTGCCCTTCGCAGCGCGTTTGGTCGCCATGATGGCTATGGTAACGAGGCCTTCGATGAGGCGGTTTTTGAACTGACAGCCCGCAAGCCCAAGGCAGAGct                         >  2:387048/1‑150 (MQ=255)                                                                                                                         ccGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTAtt                    <  1:490571/150‑1 (MQ=255)                                                                                                                         ccGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTAtt                    >  1:1272910/1‑150 (MQ=255)                                                                                                                             gtTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCcat                <  2:456379/150‑1 (MQ=255)                                                                                                                                       aTGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCa                              <  1:1054597/126‑1 (MQ=255)                                                                                                                                       aTGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCa                              >  2:1054597/1‑126 (MQ=255)                                                                                                                                           ccgctcccGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAgggg  <  2:1166136‑M2/142‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                              AACCGGCGAAGTCGTTCGCCCGGGTTGATACCAATCCACAGGCCTGGCTCGGGACTCGGGCCCCTGTGGGAGCGGGCGCGCCCGCGAAGAATACAACTCGGTGCCAGGCACGGGCTTCGCCCGTGTTCGCGGGCATGCCCGCTCCCGAAAGTGTCACGCACATGACTGCCCTTCGCAGCACGTTTGGTCGCGATGATGGCTATGGTAACGAGGTCTTCGATGAGGCGATTTTTGAACTGACGGCCCGCAAGCCCAAGGCAGAGCTCTATTCCATCATCCCGAAAGGGG  >  NC_002947/80916‑81203

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.