New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 800155	46 (0.940)	4 (0.080)	4/240	NT	8.4%	coding (321/969 nt)	ispB	octaprenyl diphosphate synthase
	?	NC_002947	= 800185	43 (0.910)					coding (291/969 nt)	ispB	octaprenyl diphosphate synthase

TTCACCTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGTACCAGCAGGGGA  >  NC_002947/800038‑800332                                                                                                                                                    |                                                                                                                                                    ttCACCTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCTTTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAga                                                                                                                                                   <  1:312671‑M2/150‑3 (MQ=255) ttCACCTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAga                                                                                                                                                   <  1:599352‑M2/150‑3 (MQ=255) ttCACCTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAga                                                                                                                                                   >  2:925335‑M2/1‑148 (MQ=255)      cTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGc                                                                                                                                              <  2:599352/150‑1 (MQ=255)      cTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGc                                                                                                                                              <  2:868666/150‑1 (MQ=255)           gCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACgg                                                                                                                                         <  1:248712/150‑1 (MQ=255)                   ccGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGcc                                                                                                                                 >  2:751248/1‑150 (MQ=255)                           ccTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGt                                                                                                                         <  1:203335/150‑1 (MQ=255)                            cTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTc                                                                                                                        >  1:529363/1‑150 (MQ=255)                               ggACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGAc                                                                                                                     <  1:598855/150‑1 (MQ=255)                                      aTCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCAcgtcg                                                                                                              >  2:709269/1‑150 (MQ=255)                                           cATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTg                                                                                                         >  1:599900/1‑150 (MQ=255)                                                     aTCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTg                                                                                               >  1:668108/1‑150 (MQ=255)                                                      tCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTgg                                                                                              <  2:529363/150‑1 (MQ=255)                                                       cGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCATAGGGCATTGGCGGTATAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGc                                                                                             <  1:477954/150‑1 (MQ=255)                                                        gAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCg                                                                                            <  2:44602/150‑1 (MQ=255)                                                         aGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCg                                                                                                                       <  2:953760/122‑1 (MQ=255)                                                         aGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCg                                                                                                                       >  1:953760/1‑122 (MQ=255)                                                         aGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCgg                                                                                           >  1:1023681/1‑150 (MQ=255)                                                          gCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGgt                                                                                          <  1:52963/150‑1 (MQ=255)                                                          gCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGgt                                                                                          <  2:599900/150‑1 (MQ=255)                                                             gggCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGtgtg                                                                                       >  2:992012/3‑150 (MQ=255)                                                                cTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAg                                                                                    <  2:703513/150‑1 (MQ=255)                                                                   gACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGgtgt                                                                                        <  1:756678/143‑1 (MQ=255)                                                                   gACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGgtgt                                                                                        >  2:756678/1‑143 (MQ=255)                                                                        tcatTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGa                                                                            <  1:924826/150‑1 (MQ=255)                                                                        tcatTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGa                                                                            >  1:559878/1‑150 (MQ=255)                                                                         catTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGAt                                                                           <  1:709269/150‑1 (MQ=255)                                                                                    aGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCca                                                                <  1:751248/150‑1 (MQ=255)                                                                                        cgAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCcagcag                                                            <  1:785178/150‑1 (MQ=255)                                                                                             aaaGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACAt                                                                                                                           <  1:497332/82‑1 (MQ=255)                                                                                             aaaGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACAt                                                                                                                           >  2:497332/1‑82 (MQ=255)                                                                                               aGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAgagcgtactggtgggcgacttcctttattcgcgctcgttcgaaatgatggtcgagctgggctcgatgccggtcatgcagatcctgtccaaggccac                                                     <  1:109883‑M2/150‑97 (MQ=255)                                                                                                    gTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGGGGATCAGCGTGGCGGTGTGCAGGAATTCGATGGTGGCGGACAGCAGGCGCAGgtcgtc                                                <  2:1008941/150‑1 (MQ=255)                                                                                                        cccACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCt                                            >  1:1164129/1‑150 (MQ=255)                                                                                                         ccaccaGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCtt                                           >  2:768492/1‑150 (MQ=255)                                                                                                             caGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAgagcgtactggtgggcgacttcctttattcgcgctcgttcgaaatgatggtcgagctgggctcgatgccggtcatgcagatcctgtccaaggccacccgggtgattgc                                         >  2:1259651‑M2/1‑40 (MQ=255)                                                                                                             caGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAgagcgtactggtgggcgacttcctttattcgcgctcgttcgaaatgatggtcgagctgggctcgatgccggtcatgcagatcctgtccaaggccacccgggtgattgc                                         <  1:1259651‑M2/148‑109 (MQ=255)                                                                                                                    cTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAgg                                <  2:1023681/150‑1 (MQ=255)                                                                                                                            gTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGcc                        >  1:1107599/1‑150 (MQ=255)                                                                                                                             ttGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAgg                                                     >  2:530969/1‑120 (MQ=255)                                                                                                                             ttGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAgg                                                     <  1:530969/120‑1 (MQ=255)                                                                                                                                 cccACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACaaa                   >  2:283738/1‑150 (MQ=255)                                                                                                                                  ccACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCTGCCCAGGGCCTTGCAACAAAg                  >  2:244748/1‑150 (MQ=255)                                                                                                                                   cacaGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGc                 >  2:1082007/1‑150 (MQ=255)                                                                                                                                     caGGGCATTGGCGGTAgagcgtactggtgggcgacttcctttattcgcgctcgttcgaaatgatggtcgagctgggctcgatgccggtcatgcagatcctgtccaaggccacccgggtgattgccgaaggtgaagtgctgcaactgtcgc               >  2:109883‑M2/1‑16 (MQ=255)                                                                                                                                      aGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGt              <  2:933404/150‑1 (MQ=255)                                                                                                                                        ggCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGcc                        >  2:268629/1‑138 (MQ=255)                                                                                                                                        ggCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGcc                        <  1:268629/138‑1 (MQ=255)                                                                                                                                           aTTGGCGGTAGAGCGGCCAAGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGt              >  2:1079022/1‑145 (MQ=255)                                                                                                                                           aTTGGCGGTAGAGCGGCCAAGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGt              <  1:1079022/145‑1 (MQ=255)                                                                                                                                            ttGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGTACcagc        >  2:1115740/1‑150 (MQ=255)                                                                                                                                                  gTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGTACCAGCAGGGGa  >  2:829652/1‑150 (MQ=255)                                                                                                                                                  gTAGAGCGGCCACGGCCCAGGCCGGACATGTCGACCAAGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCCGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGTACCAGCAGCGGa  <  2:366525/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    TTCACCTTCGGCAATCACCCGGGTGGCCTTGGACAGGATCTGCATGACCGGCATCGAGCCCAGCTCGACCATCATTTCGAACGAGCGCGAATAAAGGAAGTCGCCCACCAGTACGCTCGGCGCGTTGCCCCACAGGGCATTGGCGGTAGAGCGGCCACGGCGCATGCCGGACATGTCGACCACGTCGTCGTGCAGCAGGGTGGCGGTGTGCAGGAATTCGATGGTGGCGGCCAGCAGGCGCAGGTCGTCGCCTTCGCGGCCCAGGGCCTTGCCACAAAGCAGTACCAGCAGGGGA  >  NC_002947/800038‑800332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.