New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 901777	36 (0.730)	5 (0.110)	5/238	NT	11.6%	coding (163/963 nt)	trxB	thioredoxin reductase
	?	NC_002947	= 901795	42 (0.900)					coding (181/963 nt)	trxB	thioredoxin reductase

TCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCTGTGATGCGCT  >  NC_002947/901647‑901940                                                                                                                                                     |                                                                                                                                                  tctcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGAc                                                                                                                                                  <  2:272755‑M2/150‑2 (MQ=255) tctcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGAc                                                                                                                                                  >  1:131930‑M2/1‑149 (MQ=255)   tcGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGAccg                                                                                                                                                >  2:724892‑M2/1‑147 (MQ=255)            gCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGctc                                                                                                                                       <  1:574146/150‑1 (MQ=255)             cccTGCCGATTACAGCGCTTCGGTGTATGCCGCCCAAGGCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAACTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGctct                                                                                                                                      <  1:1031470/150‑1 (MQ=255)               cTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGa                                                                                                                                    <  1:1048865/150‑1 (MQ=255)                 gCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATg                                                                                                                                  >  1:435600/1‑150 (MQ=255)                  ccGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGc                                                                                                                                 >  1:1152482/1‑150 (MQ=255)                        aCAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGTGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTa                                                                                                                           <  1:1222913/150‑1 (MQ=255)                                   gtgtATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCAc                                                                                                                >  1:304950/1‑150 (MQ=255)                                          ccgccCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGAt                                                                                                                                   <  2:797858/124‑1 (MQ=255)                                          ccgccCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGGCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGAt                                                                                                                                   >  1:797858/1‑124 (MQ=255)                                             cccGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCGTCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGtt                                                                                                      <  1:719777/150‑1 (MQ=255)                                               cGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGtttt                                                                                                    <  1:272755/150‑1 (MQ=255)                                                           aaGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATc                                                                                        >  1:384257/1‑150 (MQ=255)                                                             gCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCa                                                                                                                                <  1:885041/108‑1 (MQ=255)                                                             gCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCa                                                                                                                                >  2:885041/1‑108 (MQ=255)                                                                   gctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGa                                                                                <  2:435600/150‑1 (MQ=255)                                                                    ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTgc                                                                                                  <  2:882569/131‑2 (MQ=255)                                                                    ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGa                                                                                                  >  1:882569/1‑131 (MQ=255)                                                                    ctgATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                               <  2:384257/150‑1 (MQ=255)                                                                        tCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACcaca                                                                           >  2:289319/1‑150 (MQ=255)                                                                            cGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCaa                                                                       <  1:94839/150‑1 (MQ=255)                                                                                              ccAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaa                                                     >  2:698678/1‑150 (MQ=255)                                                                                               cAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaac                                                    >  2:452767/1‑150 (MQ=255)                                                                                                aGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCcaaca                                                   >  2:1079681/1‑150 (MQ=255)                                                                                                       caccaccaccGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGcc                                                                                                             >  1:595188/1‑85 (MQ=255)                                                                                                       caccaccaccGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGcc                                                                                                             <  2:595188/85‑1 (MQ=255)                                                                                                           accaccGAAGTCGACAACTGGCCGGGCGACCCCCACGCCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTTAAACCGAAAGAGTCTTCGACCACATCAACGCTGTCGACCTGGCCCACAAGCGCTTCAcc                                        >  2:293300/1‑150 (MQ=255)                                                                                                            ccaccGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                               >  1:264635/1‑110 (MQ=255)                                                                                                            ccaccGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGAc                                                                               <  2:264635/110‑1 (MQ=255)                                                                                                               ccGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAAACGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGc                                    >  2:918613/1‑150 (MQ=255)                                                                                                                 gAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGAccggcccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagcagcggcttgaggttggcacgggcggcatacaccgcagcgctgt                                  <  2:819259‑M2/150‑114 (MQ=255)                                                                                                                  aaGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAgg                                 <  1:218710/150‑1 (MQ=255)                                                                                                                     tCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTg                              >  1:182803/1‑150 (MQ=255)                                                                                                                       gACAACTGGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagca                                                                                 <  1:339218‑M2/97‑67 (MQ=255)                                                                                                                       gACAACTGGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatcagca                                                                                 >  2:339218‑M2/1‑31 (MQ=255)                                                                                                                          aaCTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGc                         >  2:430494/1‑150 (MQ=255)                                                                                                                           aCTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCAAATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCg                        <  1:293300/150‑1 (MQ=255)                                                                                                                             tGGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatc                                                                                     <  1:53214‑M2/87‑63 (MQ=255)                                                                                                                             tGGCCGGGCGACCCCCACGGCCTGAccggccagttgtcgacttcggtggtggtggtcagctggccacccgcctgcatgccggtgatc                                                                                     >  2:53214‑M2/1‑25 (MQ=255)                                                                                                                                ccGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAg                   <  2:304950/150‑1 (MQ=255)                                                                                                                                 cGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGt                  >  1:522752/1‑150 (MQ=255)                                                                                                                                    gCNACCCCCACGGCCTGACCGGCCCGGNTCTGATGCAGCGNATGCAANANCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTaca               >  1:822828/1‑150 (MQ=255)                                                                                                                                      gACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACAcc             >  2:601497/1‑150 (MQ=255)                                                                                                                                       aCCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCt            <  1:430494/150‑1 (MQ=255)                                                                                                                                        cccccACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCtg           <  1:452767/150‑1 (MQ=255)                                                                                                                                         ccccACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCtgt          <  1:784865/150‑1 (MQ=255)                                                                                                                                           ccACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCTGTGa        >  1:1126373/1‑150 (MQ=255)                                                                                                                                            gaCGGCCTGACCGGCCCGGCTCTGATGAAGCGTATGCACGAGACAGCCGTGTGTTTTGAAACCGAAATCGCCGTCAACCACATCAACGCTGTCTACAGGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCTGTGAt       >  1:989474/2‑150 (MQ=255)                                                                                                                                                 ccTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCTGTGATGCGCt  >  2:317189/1‑150 (MQ=255)                                                                                                                                                   tGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCt                                                           <  1:1248559/91‑1 (MQ=255)                                                                                                                                                   tGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCt                                                           >  2:1248559/1‑91 (MQ=255)                                                                                                                                                     |                                                                                                                                                  TCTCGGTTCCGGCCCTGCCGGTTACAGCGCTGCGGTGTATGCCGCCCGTGCCAACCTCAAGCCGCTGCTGATCACCGGCATGCAGGCGGGTGGCCAGCTGACCACCACCACCGAAGTCGACAACTGGCCGGGCGACCCCCACGGCCTGACCGGCCCGGCTCTGATGCAGCGTATGCAAGAGCACGCCGAGCGTTTTGAAACCGAAATCGTCTTCGACCACATCAACGCTGTCGACCTGGCCAACAAGCCGTTCACCCTGCAGGGTGACAGCGGCAAGTACACCTGTGATGCGCT  >  NC_002947/901647‑901940

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.