New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1311774 =	45 (0.920)	3 (0.070) +GCATCCACT	3/232	NT	7.5%	intergenic (‑236/+42)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	3963035 =	35 (0.710)					intergenic (+37/+80)	PP_3492/PP_3493	acyl‑CoA dehydrogenase/LysR family transcriptional regulator

ATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCC  >  NC_002947/3962886‑3963181                                                                                                                                                      |                                                                                                                                                   aTTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGAcg                                                                                                                                                    >  2:785367/1‑150 (MQ=255)      gacgccctgcgcaagcggcgcgaagatggcctggcaatgctggagaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccctgtgggagcgggcgagcccgcgaagcatccactGCGGTg                                                                                                                                               >  2:701489‑M2/145‑150 (MQ=255)      ccGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTg                                                                                                                                               >  2:971733/1‑150 (MQ=255)                 cTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCgg                                                                                                                                    >  2:797636/1‑150 (MQ=255)                 cTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCgg                                                                                                                                    >  2:399514/1‑150 (MQ=255)                  tATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGc                                                                                                                                   >  1:825308/1‑150 (MQ=255)                       gcgcgaagatggcctggcaatgctggagaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccttgtgggagcgggcgagcccgcgaagcatccactGCGGTGGATGCCACCGGCTTTGc                                                                                                                              <  1:268488‑M2/23‑1 (MQ=255)                       ccGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGc                                                                                                                              <  1:1138731/150‑1 (MQ=255)                       ccGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGc                                                                                                                              <  1:971733/150‑1 (MQ=255)                                         ccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGgcgcgc                                                                                                            >  1:644943/1‑150 (MQ=255)                                         ccAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGgcgcgc                                                                                                            >  1:1220894/1‑150 (MQ=255)                                             aTCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAGCGTACGTGTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCCGCGTTCGCGGGCGCGCCCGc                                                                                                        >  1:79701/1‑150 (MQ=38)                                                tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGGATAGCGGTTTTTGGGGGGGCGTGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc                                                                                                     <  1:797636/150‑1 (MQ=39)                                                tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc                                                                                                     >  1:448572/1‑150 (MQ=255)                                                tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc                                                                                                     <  2:1034475/150‑1 (MQ=255)                                                tATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTcc                                                                                                     <  2:1063630/150‑1 (MQ=255)                                                 agaaggccgccctgcgcctggaagccattcgcgtgctggtggctggctagcgcaggccccgcgccccctgtgggagcgggcgagcccgcgaagcatccactGCGGTGGATGCCACCGGCTTTGCCGGTGTTCGCGGGCGTGCCCGCTccc                                                                                                    <  1:701489‑M2/49‑1 (MQ=255)                                                                          gATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACtt                                                                           <  1:680032/150‑1 (MQ=255)                                                                                      gcgGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAgcg                                                               >  1:1273293/1‑150 (MQ=255)                                                                                                aaaaaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTATGGGGAAGCGGGCGACGCGGGGGAGGACACCGACTTTGCCCGTGTTCGCGGGCGCGCCCGCTACCACAGGAATGACACTGCGGAAATCTTCTCGCGTCAGCGCAAATAccaa                                                     >  2:204982/1‑148 (MQ=37)                                                                                                  aaaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCgcgc                                                   >  2:677262/1‑150 (MQ=255)                                                                                                   aaCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGca                                                  >  2:1024352/1‑150 (MQ=255)                                                                                                    aCTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTTCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcat                                                 <  1:1108631/150‑1 (MQ=255)                                                                                                     cTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcatc                                                <  2:825308/150‑1 (MQ=255)                                                                                                     cTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGcatc                                                >  1:296059/1‑150 (MQ=255)                                                                                                             tGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATccacca                                        >  2:1151290/1‑150 (MQ=255)                                                                                                                  cGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCCATACCGCGCATCATCCACCACCCTg                                   <  2:79701/150‑1 (MQ=255)                                                                                                                      aaGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCAt                               <  2:448572/150‑1 (MQ=255)                                                                                                                         gCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGcc                            >  2:50619/1‑150 (MQ=255)                                                                                                                          cAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGccc                           <  2:115068/150‑1 (MQ=255)                                                                                                                           aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACcgc                                                     <  2:641567/123‑1 (MQ=255)                                                                                                                           aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACcgc                                                     >  1:641567/1‑123 (MQ=255)                                                                                                                           aaCGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAAGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGcccc                          >  1:247806/1‑150 (MQ=255)                                                                                                                            aCGCGGTTCTTGGGGACGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGGCACCGCCGCAAACTTCTCGCCTCAGCGCCAATACCGCGCCTCATCCACCACCCCGGCATGCCCCt                         >  2:118890/1‑150 (MQ=38)                                                                                                                              gcgGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTAACAGCGGCAAACTTCTCGCCTCAGCGCCAATACCTCGCAGCATCCACCACCCTGGCATGcgaatcg                       >  2:211505/1‑144 (MQ=38)                                                                                                                              gcgGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCGCCCACAGGAATGTCACCGCGGCAAACTTCTCGGCTCAGGGCCAATACAGCGCATCATCCACCACCCTGGCATGCCCCTCg                       >  1:307225/1‑150 (MQ=255)                                                                                                                                       gggggAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGcc              >  2:890496/1‑150 (MQ=255)                                                                                                                                        ggggAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCg             >  1:1242989/1‑150 (MQ=255)                                                                                                                                            aGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAg         <  2:296059/150‑1 (MQ=255)                                                                                                                                                 gCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCACGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGACACCTGGGCCTGGCAGCCACCACCCTGGCATGCCCCTCGCACGGCGCCGGCAGTTGCt    >  2:359321/1‑150 (MQ=25)                                                                                                                                                   gACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTcc  >  2:171423/1‑150 (MQ=255)                                                                                                                                                      |                                                                                                                                                   ATTACCCGGTGGAGCGCTATTACCGGGATGCGCGGATTACCCAGATCTATGAAGGGTCGAGCGAGATCCAGCGGATGCTGATTGCGCGGGAATTGAAAAACTATCCGCTGTAACGCAAAGGCAACGCGGTTTTTGGGGGAGCGGGCGACGCGGTGGAGGGCACCGGCTTTGCCGGTGTTCGCGGGCGCGCCCGCTCCCACAGGAATGTCACCGCGGCAAACTTCTCGCCTCAGCGCCAATACCGCGCATCATCCACCACCCTGGCATGCCCCTCGAACAGCGCCGGCAGTTGCTCC  >  NC_002947/3962886‑3963181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.