New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2414787 | 28 (0.570) | 5 (0.110) | 3/234 | NT | 13.5% | intergenic (+286/‑59) | PP_2114/PP_2115 | transposase/hypothetical protein |
? | NC_002947 | 4908051 = | 38 (0.830) | coding (19/198 nt) | PP_4317 | hypothetical protein |
GCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTA > NC_002947/4907905‑4908200 | gCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCTTTGCCGTTGCCGTTGCCGTTGATCTTAATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAg < 1:725752/150‑1 (MQ=255) aaCTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGGTCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg > 1:447460/1‑150 (MQ=255) tgCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCa > 1:951614/1‑150 (MQ=255) cTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATg > 1:206468/1‑150 (MQ=255) gttgttGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGa > 2:450850/1‑150 (MQ=255) tgttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATg < 2:69363/150‑1 (MQ=255) gttgctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGc > 1:1095629/1‑150 (MQ=255) gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg > 1:1188344/1‑130 (MQ=255) gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAg < 2:1188344/130‑1 (MQ=255) gctgttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCg > 1:1016825/1‑150 (MQ=255) ttgctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCaa > 2:1166165/1‑150 (MQ=40) gctgttgcCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAgc < 2:1251968/150‑1 (MQ=255) tgccgttgccgttgccgttgccgttgccgtTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGa < 2:839587/150‑1 (MQ=38) gccgttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCa < 2:704944/150‑1 (MQ=39) ttgccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTTATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGAt > 1:1152546/1‑150 (MQ=37) gccgttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATgg < 1:450850/150‑1 (MQ=38) gttgccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGc < 1:1166165/150‑1 (MQ=39) gccgttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCtt < 2:951614/150‑1 (MQ=38) ttgccgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGAGCTGAGGCCCCAGGATGGTGCCTTCGgc < 2:1043435/150‑1 (MQ=21) cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCTGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCg > 2:829065/1‑144 (MQ=14) cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCTGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCg < 1:829065/144‑1 (MQ=14) cgttgATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCgg > 1:1245927/1‑150 (MQ=31) aaaagtaaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGc > 1:332505‑M2/79‑150 (MQ=255) aaccaaaaaacgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcTCCCGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGa < 2:321397‑M2/78‑1 (MQ=255) cgctgcgctcccatcatccggcccctgcgctgcgctccggggtcccctcactccggccttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGa < 2:332505‑M2/88‑1 (MQ=255) cttgatcttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCgg > 1:206569/1‑150 (MQ=32) cttgatcttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATAGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGagcgca > 2:1171996/1‑150 (MQ=17) ctgcgctgcgctccggggtcccctcactccggccttgcG‑AAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg > 1:1282643‑M2/39‑124 (MQ=255) ctgcgctgcgctccggggtcccctcactccggccttgcG‑AAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCAAGGCCg < 2:1282643‑M2/86‑1 (MQ=255) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCGGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg < 2:447460/150‑1 (MQ=17) ttCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg > 2:475176/1‑150 (MQ=32) gcgACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGc > 1:9575/1‑150 (MQ=32) gcgACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGc > 1:1082499/1‑150 (MQ=32) aCTTCAGGAGGCCGAACGCAGGCCTTGCC‑GAGGCAGCTGTCGAGAGCTACTTGCTGCAAAGCTGTCAGGCGCGATTATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCgg > 1:348515/1‑150 (MQ=2) cAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGNGAGGCCNGAGTGAGGGGACNCCGGAGCGCAGCGCAGGGGCCGgatga < 1:1171996/150‑1 (MQ=17) aggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg > 1:493106/1‑139 (MQ=33) aggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAgg < 2:493106/139‑1 (MQ=33) ggaggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATACCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGatgatg > 1:935734/1‑150 (MQ=17) ggCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa < 2:9575/150‑1 (MQ=32) gCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg < 2:1095629/150‑1 (MQ=32) gCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAg < 1:475176/150‑1 (MQ=32) cGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg > 2:536947/1‑150 (MQ=32) cGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAgcg > 1:973949/1‑150 (MQ=32) aaCGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCa < 2:1016825/150‑1 (MQ=32) gCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGGCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGCTGGGGGCGCAGCg > 1:429397/1‑150 (MQ=12) aGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGCCACAAGAGCCCAGCCCATGGGCCGGATGATGGGAGCGCAGCGtt > 2:782687/1‑150 (MQ=11) cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa < 2:397713‑M2/131‑1 (MQ=255) cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGa > 1:397713‑M2/6‑136 (MQ=255) cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtttttt < 2:1152546‑M2/145‑1 (MQ=255) cttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGtttttt < 1:536947‑M2/145‑1 (MQ=255) ttgcG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGACCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTg > 2:268284‑M2/5‑150 (MQ=255) gcG‑GAGGCAGGTGACGGGCATGTATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGt < 2:348515‑M2/148‑1 (MQ=255) g‑gAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTa > 2:1043838/1‑150 (MQ=32) | GCAAAACTGTACTGTGCTGTTGTTGCTGTTGCTGTTGCCGTTGCCGTTGCCGTTGCCGTTGCCGTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTGATCTTCGCGACTTCAGGAGGCCGAACGCAGGCCTTGCG‑GAGGCAGGTGACGGGCATGGATGCCCGTCAAGCGCTGAGGCCCCAGGATGGGGCCTTCGGCGCGGTCCTGCCGGGAGCGAGGCCGGAGTGAGGGGACCCCGGAGCGCAGCGCAGGGGCCGGATGATGGGAGCGCAGCGTTTTTTGGTTA > NC_002947/4907905‑4908200 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |