New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 2426127 | 45 (0.920) | 4 (0.080) | 4/244 | NT | 9.0% | coding (810/942 nt) | PP_2127 | sensor histidine kinase |
? | NC_002947 | = 2426181 | 37 (0.770) | coding (756/942 nt) | PP_2127 | sensor histidine kinase |
GGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTTC > NC_002947/2426034‑2426330 | ggTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgc > 2:791013‑M2/1‑148 (MQ=255) ggTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgc > 1:5392‑M2/1‑148 (MQ=255) cgcgGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGaaa < 2:83234/150‑1 (MQ=255) cACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCa > 1:505732/1‑150 (MQ=255) aCATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCt < 2:936125/150‑1 (MQ=255) tCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGa < 2:1111881/150‑1 (MQ=255) gCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATc < 1:1173206/150‑1 (MQ=255) cTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGCTCg > 1:71921/1‑150 (MQ=255) ttCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGa > 1:1057605/1‑150 (MQ=255) tGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGAc > 2:392548/1‑150 (MQ=255) tCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑c < 1:620486/136‑1 (MQ=255) tCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑c > 2:620486/1‑136 (MQ=255) ccAGGCTGATTTGTGATGTCTAGGCTGCCCTGCAGCGCGATTACCCGTTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAggg < 2:71921/150‑1 (MQ=255) aGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGt < 1:392548/150‑1 (MQ=255) gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCGTCTTGCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt < 1:85990/150‑1 (MQ=255) gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt > 1:52198/1‑150 (MQ=255) gACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGtt < 2:625613/150‑1 (MQ=255) tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa < 2:1113245/150‑1 (MQ=255) tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa > 2:1032206/1‑150 (MQ=255) tGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGAAAGCCCTAAAAGGGAGCGTTGCa > 2:1036792/1‑150 (MQ=255) tGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCATGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACAACCAGCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGc > 2:676253/1‑150 (MQ=255) gAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGTCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGAc > 1:37506/1‑150 (MQ=255) cTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTtgtg < 2:1057605/150‑1 (MQ=255) cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCTGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttcccgt < 1:1121495‑M2/139‑81 (MQ=255) cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCTGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttcccgt > 2:1121495‑M2/1‑59 (MQ=255) cccGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGgc < 2:505732/150‑1 (MQ=255) gCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttccagtggtccccgcgcacc < 1:799046‑M2/150‑95 (MQ=255) gCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCgca > 2:752047/1‑150 (MQ=255) gCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGt < 1:128536/142‑1 (MQ=255) gCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGt > 2:128536/1‑142 (MQ=255) ccAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTg < 2:505454/150‑1 (MQ=255) ccGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTg < 2:652954/138‑1 (MQ=255) ccGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTg > 1:652954/1‑138 (MQ=255) gACCGGCCTCGGCCGGGTGCCGGGCAGGGgcgggtaatcgcgctgcagggcagcctcgacatcaccagtcagcctggccgaggcacgcagatcgaagcgatgttccagtggtccccgcgcacccagcaacgcgccaggagtattaccaac > 2:799046‑M2/1‑29 (MQ=255) cGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATACAACT‑CATCGAGCAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGCATGTTTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATAc > 1:874419/1‑150 (MQ=255) tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa < 2:236222/79‑1 (MQ=255) tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCa > 1:236222/1‑79 (MQ=255) tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCgg < 1:994589/84‑1 (MQ=255) tCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCgg > 2:994589/1‑84 (MQ=255) ccGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGcctcct < 2:288946/132‑1 (MQ=255) ccGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGcctcct > 1:288946/1‑132 (MQ=255) cGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGc < 1:1032206/150‑1 (MQ=255) gTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCAt > 2:335519/1‑150 (MQ=255) gTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCAt < 1:752047/150‑1 (MQ=255) ggCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTtc > 1:630461/1‑150 (MQ=255) | GGTGCGCGGGGACCACGGGAACATCGCTTCGATCTGCGTGCCTCGGCCAGGCTGACTGGTGATGTCGAGGCTGCCCTGCAGCGCGATTACCCGCTCCTGCATGCCGGCCAGGCCGCGCTGACCGGCCTCGGCCGGGTGCCGGGCAGGGGCGAAACCACGACCATCGTCCTGGATCGA‑CAACGACAGCCCTTCAGGGGTGCGTTGCAGGCGGATGACCAGGTTGTGTGCCTGGGCGTGGCGCAGCATGTTGGTCACTGCCTCCTGGGTAATACGGAACACCGCCATGGCCACGGCTTC > NC_002947/2426034‑2426330 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |