New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2974781 = | 42 (0.860) | 4 (0.090) | 4/236 | NT | 8.8% | coding (671/777 nt) | PP_2601 | IclR family transcriptional regulator |
? | NC_002947 | 2974820 = | 43 (0.930) | coding (710/777 nt) | PP_2601 | IclR family transcriptional regulator |
CTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCT > NC_002947/2974680‑2974955 | cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt > 1:1110137/1‑150 (MQ=255) cTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAtt < 1:568145/150‑1 (MQ=255) ggTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt < 1:951811/150‑1 (MQ=255) gactgtgcggtaatcgaccggaatattccctcaggcaaacagctcgctggcgggactggccgccgacagctcttctgccgccgacaacaatagcggtgCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgtt > 2:866487‑M1/99‑150 (MQ=255) gTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttgttg < 2:277860/150‑1 (MQ=255) tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt < 1:431057/150‑1 (MQ=255) tCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATtgttgt < 2:1198000/150‑1 (MQ=255) aCCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa < 1:569607/150‑1 (MQ=255) cTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCaga > 1:833360/1‑150 (MQ=255) cTCCGCCATCGGCACCTCAGCCCTGGCCGAAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCAATTGTTGTCGGCGGCaga > 1:500749/1‑150 (MQ=255) gCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTcgg > 2:181829/1‑150 (MQ=255) ccGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGACTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCa < 2:833360/150‑1 (MQ=255) aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa > 2:800291/1‑118 (MQ=255) aGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCa < 1:800291/118‑1 (MQ=255) tgCGCCCCCCGCAAAGTGACGACGTGATTGTCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGt > 2:1114683/1‑150 (MQ=255) cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc > 2:42145/1‑135 (MQ=255) cgccgcCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTccc < 1:42145/135‑1 (MQ=255) ccgcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGc < 2:1234145/150‑1 (MQ=255) gcccgcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCt < 2:709064/150‑1 (MQ=255) gcAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAgg < 2:554114/150‑1 (MQ=255) cAAAGTGACGCGCTGAGTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCCCAG‑GCAGAGAGGTCAGCGCTGGCCCAGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAggg < 1:415201/150‑1 (MQ=255) aCGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTc < 1:715011/150‑1 (MQ=255) aGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCgg > 1:823577/1‑150 (MQ=255) ttGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg > 2:294139/1‑143 (MQ=255) ttGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCg < 1:294139/143‑1 (MQ=255) gCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGTCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata < 2:467055/135‑1 (MQ=255) gCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAata > 1:467055/1‑135 (MQ=255) tGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGca > 1:400403/1‑150 (MQ=255) gAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGt < 2:400403/150‑1 (MQ=255) gCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCt > 2:444452/1‑150 (MQ=255) aacaatagcggtgccagcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTc > 2:866487‑M2/53‑150 (MQ=255) cATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg < 2:1212387/61‑1 (MQ=255) cATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTAttg > 1:1212387/1‑61 (MQ=255) aTCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGt > 1:524156/1‑150 (MQ=255) tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt > 2:737400/1‑130 (MQ=255) tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGt < 1:737400/130‑1 (MQ=255) tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt < 2:524156/150‑1 (MQ=255) tCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGtt < 1:109385/150‑1 (MQ=255) CAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGttc < 2:737503‑M1/150‑1 (MQ=255) gctgcgaggcggctctgtgccagccgcgcagcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGttct > 2:1235374‑M2/38‑150 (MQ=255) agcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAg > 1:909290‑M2/38‑89 (MQ=255) agcgctgcgaggcggctctgtgccagccgcgcgctggCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAg < 2:909290‑M2/52‑1 (MQ=255) ggCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaaaa < 1:939522/147‑1 (MQ=255) ggCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGaaaa > 2:939522/1‑147 (MQ=255) gccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTgg < 2:823577/150‑1 (MQ=255) gccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTgg < 1:61453/150‑1 (MQ=255) ccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct > 2:956746/1‑133 (MQ=255) ccgccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTtcttct < 1:956746/133‑1 (MQ=255) ccTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCt > 2:1170410/1‑150 (MQ=255) | CTGGGTCGAGGAAACCTCCGCCATCGGCACCTCAGCCCTGGCCGCAGTGGTGCGCCGCCCGCAAAGTGACGAGGTGATTGGCGTGCTGAGCATCGCCGGGCCCAGCGCGCGGCTGGCACAGAGCCGCCTCG‑CAGCGCTGGCACCGCTATTGTTGTCGGCGGCAGAAGAGCTGTCGGCGGCCAGTCCCGCCAGCGAGCTGTTTGCCTGAGGGAATATTCCGGTCGATTACCGCACAGTCTGTTGCGCCCGTTCTTCTGAAAAGCTGAACTTGGTTCT > NC_002947/2974680‑2974955 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |