New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3526864	49 (1.000)	4 (0.080)	4/244	NT	7.9%	coding (32/1419 nt)	imuB	DNA repair DNA linked protein
	?	NC_002947	= 3526887	45 (0.940)					coding (55/1419 nt)	imuB	DNA repair DNA linked protein

CGACACACGCCCGGCGCAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGATGG  >  NC_002947/3526739‑3527029                                                                                                                                                     |                                                                                                                                               cGACACACGCCCGGCGCAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGa                                                                                                                                               >  2:92711‑M2/1‑149 (MQ=255)  gACACACGCCCGGCGCAATTGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGag                                                                                                                                              <  2:737858‑M2/150‑3 (MQ=255)     acacGCCCGGCGCAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTgcgtgagcgt                                                                                                                                           >  1:187601/1‑150 (MQ=255)           ccGGCGCAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCTACCAGCGCTGCCAAGACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTgacgac                                                                                                                                     >  1:482722/1‑150 (MQ=255)                gcAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGa                                                                                                                                <  1:535242/150‑1 (MQ=255)                  aaTGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGaca                                                                                                                              <  2:429209/150‑1 (MQ=255)                          gTGCTGAAAAGCCGGGGTGGGATGCCACCAGCGATGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTg                                                                                                                      <  2:225119/150‑1 (MQ=255)                              tGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGc                                                                                                                  <  1:625309/150‑1 (MQ=255)                               gAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGt                                                                                                                    <  2:253971/147‑1 (MQ=255)                               gAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGt                                                                                                                    >  1:253971/1‑147 (MQ=255)                                aaaaGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTg                                                                                                                >  1:626030/1‑150 (MQ=255)                                 aaaGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGa                                                                                                               <  1:701805/150‑1 (MQ=255)                                 aaaGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGa                                                                                                               <  2:70306/150‑1 (MQ=255)                                       ggggTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGCTGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCg                                                                                                         <  1:601282/150‑1 (MQ=255)                                             gCATGCCACCCACACTTCTAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCCCAGTTTGCGCTGGACACCGTCCTGCGTGAGCGTGCCGGCCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGa                                                                                                   <  1:1054870/150‑1 (MQ=255)                                                   caccaGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGc                                                                                             <  2:626030/150‑1 (MQ=255)                                                     ccaGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGt                                                                                           >  1:86521/1‑150 (MQ=255)                                                           cTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCgtg                                                                                     <  2:86521/150‑1 (MQ=255)                                                              ccAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTg                                                                                  >  2:806355/1‑150 (MQ=255)                                                               cAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTc                                                                                          <  1:923692/141‑1 (MQ=255)                                                               cAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTc                                                                                          >  2:923692/1‑141 (MQ=255)                                                                aaTACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTgca                                                                                >  1:42231/1‑150 (MQ=255)                                                                aaTACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTgca                                                                                >  1:1232368/1‑150 (MQ=255)                                                                 aTACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCTTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTgcag                                                                               <  1:725204/150‑1 (MQ=255)                                                                     ccTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGAcc                                                                                                                                    >  1:66748/1‑93 (MQ=255)                                                                     ccTGCCCGGGGCGGGGCTGATGCACCATGCTCTGCGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGAcc                                                                                                                                    <  2:66748/93‑1 (MQ=255)                                                                          ccGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTgcgtgagcgtga                                                                                                                                         >  2:761543/1‑83 (MQ=255)                                                                          ccGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTgcgtgagcgtga                                                                                                                                         <  1:761543/83‑1 (MQ=255)                                                                            ggggcggggcTGATGCACCATGCTCTGGGCTTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAAccc                                                                    >  1:1150249/1‑150 (MQ=255)                                                                                        aTGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGc                                                        >  1:513022/1‑150 (MQ=255)                                                                                                tGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGcc                                                >  1:1083794/1‑150 (MQ=255)                                                                                                    ctGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGcg                                            <  2:482722/150‑1 (MQ=255)                                                                                                     tGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGcgg                                           <  1:1243567/150‑1 (MQ=255)                                                                                                         ccTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGc                                                                                                                  >  2:102123/1‑75 (MQ=255)                                                                                                         ccTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGc                                                                                                                  <  1:102123/75‑1 (MQ=255)                                                                                                          cTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGcgggccgg                                      <  2:1083794/150‑1 (MQ=255)                                                                                                                ccTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGagctgcgggagcaggatgcaggcccagagcatggtgcatcagccccgccccgggcagggtattggcagcgcgggtggcat                                                                <  2:504435‑M2/118‑81 (MQ=255)                                                                                                                ccTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGagctgcgggagcaggatgcaggcccagagcatggtgcatcagccccgccccgggcagggtattggcagcgcgggtggcat                                                                >  1:504435‑M2/1‑38 (MQ=255)                                                                                                                 cTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAAcc                               <  1:806355/150‑1 (MQ=255)                                                                                                                 cTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAAcc                               <  1:737858/150‑1 (MQ=255)                                                                                                                  tGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAAccc                              >  2:1270260/1‑150 (MQ=255)                                                                                                                     tCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGagctgcgggagcaggatgcaggcccagagcatgg                                                                                                              >  2:1096972‑M2/1‑33 (MQ=255)                                                                                                                     tCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGagctgcgggagcaggatgcaggcccagagcatgg                                                                                                              <  1:1096972‑M2/67‑35 (MQ=255)                                                                                                                       ccGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGAcc                         >  1:18718/1‑150 (MQ=255)                                                                                                                              ttGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAgcgc                  >  1:950648/1‑150 (MQ=255)                                                                                                                                        cacCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAg         >  2:1134602/1‑149 (MQ=255)                                                                                                                                        cacCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAg         <  1:1134602/149‑1 (MQ=255)                                                                                                                                         acCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGcc       >  1:379620/1‑150 (MQ=255)                                                                                                                                           cGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCgtg                                                                                     <  2:244765/70‑1 (MQ=255)                                                                                                                                           cGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCgtg                                                                                     >  1:244765/1‑70 (MQ=255)                                                                                                                                            gTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGAt    <  2:950648/150‑1 (MQ=255)                                                                                                                                            gTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGAt    <  2:1228228/150‑1 (MQ=255)                                                                                                                                            gTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGAt    >  2:1041789/1‑150 (MQ=255)                                                                                                                                              ccTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGATgg  <  2:513022/150‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGACACACGCCCGGCGCAATGGCGCGTGCTGAAAAGCCGGGGTGGCATGCCACCAGCGCTGCCAATACCCTGCCCGGGGCGGGGCTGATGCACCATGCTCTGGGCCTGCATCCTGCTCCCGCAGCTTGCGCTGGACACCGTCCTGCGTGAGCGTGACGACCCTGACACGCCTTTGGTGCTGATTGGCGGGCCGACCCAGCGTCGCGTGTTGCAGGCAGTCAACCCGGCGGCCGCTGCACTGGGCCTGCGGGCCGGGCAAACCCTGACCGCAGCGCGTGCCCTAGCCGATGG  >  NC_002947/3526739‑3527029

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.