| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5279912 = | 39 (0.800) | 3 (0.070) | 3/232 | NT | 7.2% | coding (83/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA |
| ? | NC_002947 | 5279973 = | 41 (0.900) | coding (144/1086 nt) | trmA | tRNA/tmRNA (uridine(54)‑C5)‑methyltransferase TrmA | |||||
CAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAG > NC_002947/5279824‑5280117 | gaaatcgtcgatcaggattgccttgtgcttctcgcccggggcgaacatggcgtagtggcgctggccatcctcgcgccacaggcggaacTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAg > 1:82304‑M1/89‑150 (MQ=255) aaCGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCCCCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGCCTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGt > 2:94471/1‑150 (MQ=255) aaCGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACNCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGt > 1:1183882/1‑150 (MQ=255) ctgctTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGgc > 1:805449/1‑150 (MQ=255) gctTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGgcgc > 2:605754/1‑150 (MQ=255) tttCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGa > 1:181601/1‑150 (MQ=255) gACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGAt > 2:572720/1‑150 (MQ=255) aCCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATg > 2:888611/1‑150 (MQ=255) aCCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATg > 1:142249/1‑150 (MQ=255) cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATgg > 2:809602/1‑148 (MQ=255) cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATgg < 1:809602/148‑1 (MQ=255) cctcctcctACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGcc > 1:38543/1‑150 (MQ=255) cACCCAGCTGGCTGCACACGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGc > 2:1277477/1‑150 (MQ=255) ccAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCAt > 1:1118783/1‑150 (MQ=255) tGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCg > 2:979894/1‑150 (MQ=255) aTGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGccc < 2:181601/150‑1 (MQ=255) ccAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg < 2:1183882/150‑1 (MQ=255) ccAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg < 2:142249/150‑1 (MQ=255) gCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGc > 1:1278352/1‑96 (MQ=255) gCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGc < 2:1278352/96‑1 (MQ=255) ccGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGca > 2:474477/1‑150 (MQ=255) cgcgAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAgcgc < 1:632924/111‑1 (MQ=255) cgcgAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAgcgc > 2:632924/1‑111 (MQ=255) tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg > 1:632006/1‑126 (MQ=255) tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCgg < 2:632006/126‑1 (MQ=255) tgctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGa < 1:1199804/150‑1 (MQ=255) gctgGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGAt < 2:805449/150‑1 (MQ=255) gCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATcgaa > 1:76187/1‑149 (MQ=255) ttCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTc < 1:82947/150‑1 (MQ=255) ctcggcgcgcaggcggtaatgctcgcgcggtgagtcgaaaacagccggttccggcgcgccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTc > 1:82304‑M2/63‑150 (MQ=255) GCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGaa > 1:1046737‑M1/1‑118 (MQ=255) GCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGaa < 2:1046737‑M1/118‑1 (MQ=255) GCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCa < 1:957038‑M1/150‑1 (MQ=255) gcgcaggcggtaatgctcgcgcggtgagtcgaaaacagccggttccggcgcgccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCAtt < 2:82304‑M2/94‑1 (MQ=255) GCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCAtt > 2:957038‑M1/1‑150 (MQ=255) cgcaggcggtaatgctcgcgcggtgagtcgaaaacagccggttccggcgcgccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTg > 2:1028933‑M2/56‑150 (MQ=255) gAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGCCCCGCAACGCAATCCTGATCGACGATTTCCCCATTGCCAGc > 2:942296/1‑150 (MQ=255) cGGCTGTTTTCGACTCCCCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAc < 2:1172383/150‑1 (MQ=255) cGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAc < 2:864416/150‑1 (MQ=255) tttCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCaa > 2:181537/1‑150 (MQ=255) tttCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCaa < 1:474477/150‑1 (MQ=255) tCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTg > 2:962078/1‑150 (MQ=255) tCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTg > 2:485069/1‑150 (MQ=255) aCCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGAt > 2:902910/1‑150 (MQ=255) gcgcgAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGcc < 1:772935/150‑1 (MQ=255) gcgAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGt > 2:648571/1‑141 (MQ=255) gcgAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGt < 1:648571/141‑1 (MQ=255) gAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATcga < 2:57912/104‑1 (MQ=255) gAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATcga > 1:57912/1‑104 (MQ=255) aGCCTTACCCCCTGCGCGCGGAGTTGCGCCGGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACACATCAACGCGTTGATGCCGCGcc < 2:76187/150‑1 (MQ=255) aGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGcgttcgc < 1:979894/150‑7 (MQ=255) cGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCa > 2:777643/1‑150 (MQ=255) cTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGcc < 1:181537/150‑1 (MQ=255) gccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAc > 1:289750‑M2/6‑109 (MQ=255) gccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAAc < 2:289750‑M2/104‑1 (MQ=255) gccgaGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAg > 2:1121370‑M2/6‑150 (MQ=255) | CAACGCATGAGTGCTGCTTTCGACCCCTCCTCCTACGCCACCCAGCTGGATGCCAAAGTGGCCCGGCTGCGCGAGCTGCTGGCACCGTTCGGCGCGCCGGAACCGGCTGTTTTCGACTCACCGCGCGAGCATTACCGCCTGCGCGCCGAGTTCCGCCTGTGGCGCGAGGATGGCCAGCGCCACTACGCCATGTTCGCCCCGGGCGAGAAGCACAAGGCAATCCTGATCGACGATTTCCCCATTGCCAGCGAACGCATCAACGCGTTGATGCCGCGCCTGAAGGCAGCCTGGCAG > NC_002947/5279824‑5280117 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |