New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5454649	NA (NA)	8 (0.170)	4/240	NT	NA	coding (1260/1329 nt)	PP_4791	transposase
	?	NC_002947	5545214 =	NA (NA)					intergenic (‑306/+571)	rpsF/rlmB	30S ribosomal protein S6/23S rRNA (guanosine(2251)‑2'‑O)‑methyltransferase RlmB

GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAG  >  NC_002947/5545066‑5545260                                                                                                                                                     |                                               gTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCaa                                               >  2:800898/1‑150 (MQ=255)   gAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAg                                             >  1:1145363/1‑150 (MQ=255)   gAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAg                                             >  1:142723/1‑150 (MQ=255)    aaTATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGc                                            <  2:694840/150‑1 (MQ=255)     atatTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGcc                                           <  2:1145363/150‑1 (MQ=255)       atTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCAACCCGTTGATACCCCAGTTTCCGGGCTTTGCTTCGCAAAGCCCg                                         <  1:938344/150‑1 (MQ=18)                  cTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGt                              >  2:899389/1‑150 (MQ=255)                     aaaCATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt                           >  1:1007630/1‑150 (MQ=255)                                  ccgatctggCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggcttc              <  1:594806/143‑1 (MQ=17)                                   gCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt                           >  1:567566/1‑136 (MQ=37)                                   gCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCtt                           <  2:567566/136‑1 (MQ=38)                                     tGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGaa           <  2:142723/150‑1 (MQ=34)                                         ggCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAActcc       <  1:800898/150‑1 (MQ=32)                                             cTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAGGCCCGGACCTGCCGGTCTtggcttctggctt               <  2:99050/138‑1 (MQ=14)                                             cTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTtggcttctggctt               >  1:99050/1‑138 (MQ=31)                                              tttCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAg  >  1:703257/1‑150 (MQ=11)                                                                                                                                                     |                                               GTGAATATTTGAACAGCCTGAAACATATTTACAGGCTGCGGGCCCTTTCGCGGGTGAACCCGCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGCTTCGAACTCCTCAAG  >  NC_002947/5545066‑5545260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.