| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 6152896 | 48 (0.980) | 6 (0.130) | 5/234 | NT | 12.6% | coding (421/489 nt) | PP_5738 | hypothetical protein |
| ? | NC_002947 | = 6152922 | 38 (0.830) | coding (447/489 nt) | PP_5738 | hypothetical protein | |||||
AGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGTCAGCAC > NC_002947/6152782‑6153069 | aGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCAt > 1:94658/1‑150 (MQ=255) gTGATGCCCTTTGCACAAGCGCAGTTGCATGACCTCGCGCCAGACGTAA‑‑CTGTGACTGGAGTTCAGACGTGTGATATTCTTTCCGATGTATTCCACGAAAACCCTGCCGGTTGCCCGTTGCTGAAGGCAAGTGAGCTGGACCGGCATGTc < 1:293000/150‑1 (MQ=255) actccATGTGCAAAAGCGCAGTTTCATTACCTCGCGCCAGACGTAATTGTGTGTCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCCCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAcc < 1:1227285/147‑1 (MQ=255) aTTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCa > 2:721666/1‑150 (MQ=255) tGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATg < 1:721666/150‑1 (MQ=255) gCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAccc > 1:667436/1‑142 (MQ=255) gCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAccc < 2:667436/142‑1 (MQ=255) cAGGTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGcc < 2:931990/150‑1 (MQ=255) aGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTg < 2:63425/116‑1 (MQ=255) aGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTg > 1:63425/1‑116 (MQ=255) tGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGc < 1:113198/150‑1 (MQ=255) gCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACCCTTTCCGATCGAATAAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAACCTTTAATGCGAAATGGCCTCGCt > 2:322024/1‑150 (MQ=255) cATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTg > 1:1177122/1‑150 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggc > 2:903864‑M2/1‑105 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggc < 1:903864‑M2/112‑8 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGTATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTaa < 1:881245/150‑1 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATgg > 1:310726/1‑136 (MQ=255) cTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATgg < 2:310726/136‑1 (MQ=255) ccTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgtag < 2:463965/124‑1 (MQ=255) ccTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgtag > 1:463965/1‑124 (MQ=255) ccTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCg < 1:249841/150‑1 (MQ=255) aTG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGcc < 2:1177122/150‑1 (MQ=255) gCAGACACTTTCCGATCGAATCAAGGCACATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGATGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATa > 2:17636/1‑150 (MQ=255) aGACGCTTTCCGATCGAATCAAGGCAAATGCTGCCGGTCGCCCGCTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAGCGCACCTTGCGTAAGTCAGGCCGATAcc < 2:94658/150‑1 (MQ=255) gACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATAccc > 1:1075103/1‑150 (MQ=255) acacTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCa < 2:823435/150‑1 (MQ=255) acTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGc > 1:805686/1‑128 (MQ=255) acTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGc < 2:805686/128‑1 (MQ=255) gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCgg < 2:609130/150‑1 (MQ=255) gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCgg > 2:236829/1‑150 (MQ=255) aTCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgcttt < 1:1207885‑M2/150‑98 (MQ=255) cAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGcagcaggc < 1:369482/150‑3 (MQ=255) aGGCAACTCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGc > 2:119485/1‑150 (MQ=255) aGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGGTGc > 2:1165345/1‑150 (MQ=255) ggCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGcc < 1:236829/150‑1 (MQ=255) ggCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGcc > 1:842981/1‑150 (MQ=255) tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggagagtgtcttcccatccgcatagaggcacacaattacgtcttgcgcgaggtcatgcaactgcgcttttgcctcttgcgtcaccctg < 1:263901‑M2/150‑117 (MQ=255) tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgctt > 1:318007‑M2/1‑34 (MQ=255) tGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgctt < 2:318007‑M2/130‑97 (MQ=255) ggTCGCCCGTTGCCGAAGGCAAGTGAGCTGgaccggcaggatttgccttgattcgatcggaaagtgtctgcccatccgcatagaggcacacaattacgtctggcgcgaggtcatgcaactgcgcttttgcaaatggcgtcaccctgaaac > 2:1207885‑M2/1‑30 (MQ=255) gCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTACCCGATCTCACTGGCCCGc > 2:844467/1‑150 (MQ=255) gCCCGGTGCCGAAGGCAAGTGCGCTGgaccggcaggatttgctttgattcgatcggaaagtgtctgcccatacgcataggggcacacaattacgtctggcgcgaggtcatgcaactgcgcttttgcaaatggcgtcaccctgaaaccgaa > 2:263901‑M2/1‑26 (MQ=255) gTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTAAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCtgtg > 1:1222496/1‑150 (MQ=255) tGCCGCAGGTAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTc < 1:1018665/150‑1 (MQ=255) tGCCGAAGGCAAGTGAGTTGTACTGGCATGTCACCCTTCAATGCGAAATGGCCACGCTGCAGCGCCGAGAAGCCGGACGCCCCTTGCGTAACGCAAGAAGATCTCCACTTGTGCCTGGTGGGTTGCCCGATCTCACTGGCCCGCTGTGTc < 1:932059/150‑1 (MQ=255) gCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCg < 1:17636/150‑1 (MQ=255) gAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGa < 2:1251437/97‑1 (MQ=255) gAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGa > 1:1251437/1‑97 (MQ=255) ggCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAAcc < 2:1075103/150‑1 (MQ=255) aGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGGGACCGCCCAACGCACCGGGGGTTAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGt > 1:478441/1‑150 (MQ=21) cTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGTCAGcac > 1:731498/1‑150 (MQ=255) | AGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTA‑TGCGGATG‑GGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCCCGATCTCACTGGCCCGCTGTGTCGGCAACCGCGTCAGCAC > NC_002947/6152782‑6153069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |