Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 449,734 | G→T | 10.6% | G301V (GGC→GTC) | PP_0370 → | acyl‑CoA dehydrogenase family protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 449,734 | 0 | G | T | 10.6% | 156.0 / 3.2 | 53 | G301V (GGC→GTC) | PP_0370 | acyl‑CoA dehydrogenase family protein |
Reads supporting (aligned to +/- strand): ref base G (20/27); new base T (3/3); total (23/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GCGGCTCGATCGAGCACAAAATGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGATCATCGTCCACCCGGACGTGCGTCGCATGC > NC_002947/449587‑449883 | gCGGCTCGATCGAGCACAAAATGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAGAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCa < 1:153270/150‑1 (MQ=255) cGGCTCGATCGAGCACAAAATGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCAt < 2:36519/150‑1 (MQ=255) gCACAAAATGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGc < 2:295993/150‑1 (MQ=255) aaaaTGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCAtt < 2:350569/135‑1 (MQ=255) aaaaTGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCAtt > 1:350569/1‑135 (MQ=255) aaaaTGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCg > 2:148734/1‑150 (MQ=255) aaTGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGc < 2:749001/150‑1 (MQ=255) aTGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGcc < 1:1179089/150‑1 (MQ=255) ccAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTc < 1:17821/150‑1 (MQ=255) aGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCGAGGCCTGGCGTCGGCCGAGCGCTCCt < 1:1094135/150‑1 (MQ=255) gCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTAt < 2:679236/150‑1 (MQ=255) ttCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCa > 2:711655/1‑150 (MQ=255) cGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGa < 1:967167/150‑1 (MQ=255) gCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAAc > 1:652823/1‑150 (MQ=255) cTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGTCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGt > 2:430799/1‑150 (MQ=255) tgtgtgATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTg < 1:1010630/150‑1 (MQ=255) gatgaACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTAAACACTATCCTTGTAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTa > 2:998431/1‑150 (MQ=255) cTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCcg > 1:580937/1‑150 (MQ=255) ttCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCcgc > 2:351521/1‑150 (MQ=255) gacgaGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGAt > 2:947808/1‑150 (MQ=255) cTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCt > 1:345573/1‑148 (MQ=255) cTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCt < 2:345573/148‑1 (MQ=255) tGTCGGCTACATCGTCGGTCAGCCGAACAAAGGCATTGCGGCCATGTTGACCATGATGAACTACGAGCGCCTGGGCGTAGGCATTCACGGAGTCGCATATGCCGAGCGCGCCTATCAGAACCCCGGGGAGTACGCCCGCGATCGCCTGCa > 2:920233/1‑150 (MQ=255) gTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCa‑a > 2:64720/1‑150 (MQ=255) tACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGTCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGt < 1:430799/150‑1 (MQ=255) tACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGt < 1:64720/150‑1 (MQ=255) gtcgGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATNAACNACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCccg > 1:659348/1‑150 (MQ=255) gCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGccc > 1:211804/1‑150 (MQ=255) aaCAAAGGCTTGGCGGCCATGTTCACCATGATGATCTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCCCCTTCA‑AAGCCGTGCCCCGGCCGGCCCACaa < 1:836414/150‑1 (MQ=255) aaCAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATC‑AATACATAAGCCGTGCCCCGGCCGGCCCACaa < 1:998431/150‑1 (MQ=255) aCAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCccggccgg > 1:270695/1‑142 (MQ=255) aCAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCccggccgg < 2:270695/142‑1 (MQ=255) aCAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGCCGTCGTCATTCAAGGCCGGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAg < 1:1050698/150‑1 (MQ=255) aaaGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCcgc > 1:673810/1‑111 (MQ=255) aaaGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCcgc < 2:673810/111‑1 (MQ=255) aGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCaa < 1:148734/150‑1 (MQ=255) gCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCt < 2:90291/61‑1 (MQ=255) gCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCt > 1:90291/1‑61 (MQ=255) gCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAgg > 2:1136207/1‑150 (MQ=255) cTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAACGa < 1:1282346/150‑1 (MQ=255) ggcggcCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACTAGCCAAGGACaa < 2:211804/150‑1 (MQ=255) ccATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCt < 1:710874/149‑1 (MQ=255) ccATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCt > 2:710874/1‑149 (MQ=255) cATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGc < 1:711655/150‑1 (MQ=255) cATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCGGTCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGc < 1:920233/150‑1 (MQ=255) cACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGAccc < 2:652823/150‑1 (MQ=255) tgatgaACTACGAGCGCCTGGGCGTCGTCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCccggc > 2:1251169/1‑112 (MQ=255) tgatgaACTACGAGCGCCTGGGCGTCGTCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCccggc < 1:1251169/112‑1 (MQ=255) tgatgaACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGatca > 2:171896/1‑150 (MQ=255) atgaACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGatcatc < 1:351521/150‑1 (MQ=255) gAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGATCATCGTCCACCCg > 2:99812/1‑150 (MQ=255) tGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAAGACAAGGCTGCCGACCCGATCATCGTCCACCCCGCCGTGc > 1:68436/1‑150 (MQ=255) cGGCATTCAAGGCCTGGCGCCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGATCATCGTCCACCCGGACGTGCGTCGCAt < 1:462326/150‑1 (MQ=255) gCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGATCATCGTCCACCCGGACGTGCGTCGCATGc > 2:273515/1‑150 (MQ=255) | GCGGCTCGATCGAGCACAAAATGGGCATCCAGGCTTCGGCTACCTGTGTGATGAACTTCGACGAGGCTGTCGGCTACATCGTCGGTGAGCCGAACAAAGGCTTGGCGGCCATGTTCACCATGATGAACTACGAGCGCCTGGGCGTCGGCATTCAAGGCCTGGCGTCGGCCGAGCGCTCCTATCAGAACGCCGTGGAGTACGCCCGCGATCGCCTGCA‑AAGCCGTGCCCCGGCCGGCCCACAAGCCAAGGACAAGGCTGCCGACCCGATCATCGTCCACCCGGACGTGCGTCGCATGC > NC_002947/449587‑449883 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |