Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 604,575 | T→C | 7.4% | V135A (GTC→GCC) | nusB → | transcription antitermination protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 604,575 | 0 | T | C | 7.4% | 157.6 / 2.5 | 54 | V135A (GTC→GCC) | nusB | transcription antitermination protein |
Reads supporting (aligned to +/- strand): ref base T (25/25); new base C (2/2); total (27/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 |
GCTGGTGCCTTGCATGACCATCGCACTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCAT > NC_002947/604432‑604717 | gcTGGTGCCTTGCATGACCATCGCACTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCgg < 1:942974/150‑1 (MQ=255) cTGGTGCCTTGCATGACCATCGCACTGGAAGAGCCGCACTCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGgc < 2:303699/150‑1 (MQ=255) tGCCTTGCATGACCATCGCACTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCa > 1:80865/1‑150 (MQ=255) cTTGCATGACCATCGCACTGGAAGAGCTCGACCTAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTg > 2:1198549/1‑150 (MQ=255) tGACCATCGCACTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCTTCGACTTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGcc < 2:262082/150‑1 (MQ=255) aCTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGt > 1:628560/1‑150 (MQ=255) ggAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCaa > 2:108265/1‑150 (MQ=255) ccagCTCGACTGGGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACgg > 2:922567/3‑150 (MQ=255) cccAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGa > 2:192106/1‑150 (MQ=255) ctggctgTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGct < 2:80865/150‑2 (MQ=255) tggctgTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCATCACCGGCGTACGGGACAAGCTTGCAc > 2:66836/1‑150 (MQ=255) gcggtgCTGCGCCTGTCCACCTGGGTGCTGATCACTCTTGGCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACct < 1:66836/147‑1 (MQ=255) tgtgCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACg > 1:1076239/1‑107 (MQ=255) tgtgCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACg < 2:1076239/107‑1 (MQ=255) tgtgCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACctgc < 1:127581/150‑1 (MQ=255) gcCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTg > 2:451225/1‑150 (MQ=255) cTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGaa < 2:628560/150‑1 (MQ=255) gTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTAc > 1:668678/1‑119 (MQ=255) gTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTAc < 2:668678/119‑1 (MQ=255) aCCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAg > 1:552723/1‑145 (MQ=255) aCCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAg < 2:552723/145‑1 (MQ=255) aCCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGaa < 1:960369/150‑1 (MQ=255) cTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGt > 2:338961/1‑150 (MQ=255) cTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGt > 1:494260/1‑150 (MQ=255) tGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTc < 1:294891/150‑1 (MQ=255) gAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAg < 1:338961/150‑1 (MQ=255) aTCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGc < 1:57991/99‑1 (MQ=255) aTCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGc > 2:57991/1‑99 (MQ=255) tCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAg < 1:580218/143‑1 (MQ=255) tCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAg > 2:580218/1‑143 (MQ=255) cGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTg < 1:192106/150‑1 (MQ=255) gcgCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTTCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTgg > 1:1076225/3‑150 (MQ=255) tGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGgc < 2:494260/150‑1 (MQ=255) cgcgTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTg < 1:108265/150‑1 (MQ=255) gtcgtGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGcc < 2:513894/150‑1 (MQ=255) gATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATggg > 2:449957/1‑150 (MQ=255) aTCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGt > 1:1153783/1‑150 (MQ=255) tCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACaa < 2:1085090/118‑1 (MQ=255) tCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACaa > 1:1085090/1‑118 (MQ=255) cAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTTCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGa < 2:1076225/150‑1 (MQ=255) gAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTc < 1:1198549/150‑1 (MQ=255) tgGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGa > 1:434490/1‑150 (MQ=255) tgGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGa > 1:1090459/1‑150 (MQ=255) aaCTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGt < 1:1091142/134‑1 (MQ=255) aaCTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGt > 2:1091142/1‑134 (MQ=255) cTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCg > 1:546796/1‑139 (MQ=255) cTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCg < 2:546796/139‑1 (MQ=255) gCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCAt > 2:151515/1‑150 (MQ=255) gCCAAGGCCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAAc < 1:221582/147‑1 (MQ=255) gCCAAGGCCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAAc > 2:221582/1‑147 (MQ=255) gCCAAGGCCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAAc > 2:220823/1‑147 (MQ=255) gCCAAGGCCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAAc < 1:220823/147‑1 (MQ=255) cAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATgg > 2:1049813/1‑125 (MQ=255) cAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATgg < 1:1049813/125‑1 (MQ=255) | GCTGGTGCCTTGCATGACCATCGCACTGGAAGAGCTCGACCCAGTCGAGCTGGCTGTGCTGCGCCTGTCCACCTGGGAGCTGATCAAACGCGTCGACGTGCCTTACCGCGTCGTGATCAACGAAGGTGTGGAACTGGCCAAGGTCTTCGGCGCCACTGACGGCCACAAGTTCGTCAACGGCGTACTGGACAAGCTTGCACCTGCGCTGCGTGAAGCAGAAGTCAAGGCGAACAAGCGCTGATCCTGGCGCTGCCTGGCCATGGGTGAGTTCGAGCTGATCAACCAT > NC_002947/604432‑604717 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |