Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 946,922 | C→A | 8.0% | Q150H (CAG→CAT) | norR ← | DNA‑binding transcriptional regulator |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 946,922 | 0 | C | A | 8.0% | 154.5 / 3.2 | 50 | Q150H (CAG→CAT) | norR | DNA‑binding transcriptional regulator |
Reads supporting (aligned to +/- strand): ref base C (21/25); new base A (2/2); total (23/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.06e-01 |
GGGCTCTGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCATTGACCAAAC > NC_002947/946779‑947067 | gggCTCTGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAgg < 2:141521/150‑1 (MQ=255) ctctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCa < 2:381954/145‑1 (MQ=255) ctctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCa > 1:381954/1‑145 (MQ=255) ctctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCa > 1:190523/1‑150 (MQ=255) ctctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCa < 2:1201555/150‑1 (MQ=255) ctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATc < 2:904372/150‑1 (MQ=255) ctGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATc < 2:253020/150‑1 (MQ=255) tGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGAAAAGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATcc > 1:851272/1‑150 (MQ=255) aaTCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTc > 2:709170/1‑150 (MQ=255) tCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGTAGGGCATCCAGCTCCa < 1:955886/150‑1 (MQ=255) tATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGa < 1:566609/150‑1 (MQ=255) aTCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGaa < 1:609349/150‑1 (MQ=255) gCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAg > 2:858725/1‑120 (MQ=255) gCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAg < 1:858725/120‑1 (MQ=255) cGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATc > 1:1045917/1‑124 (MQ=255) cGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATc < 2:1045917/124‑1 (MQ=255) ctggcGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGTCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAg < 2:467514/150‑1 (MQ=255) gCTCGCCTCGATGGTGTTCGTCATAGCAGCGCAAGGACAGGTGCTTGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAggg < 2:851272/150‑1 (MQ=255) tCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTg > 2:1070460/1‑150 (MQ=255) cGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGa < 1:1070460/150‑1 (MQ=255) gcgcGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGAcc > 2:556962/1‑150 (MQ=255) gcgcGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGAcc < 2:723442/150‑1 (MQ=255) cgcgATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCa < 2:515099/150‑1 (MQ=255) gATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGc < 2:592030/150‑1 (MQ=255) gATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGc > 2:1001749/1‑150 (MQ=255) tGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGAGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGccc < 1:913426/150‑1 (MQ=255) gTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGgcg < 2:190523/150‑1 (MQ=255) tCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGgcgc > 2:1054089/1‑150 (MQ=255) cgcAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGAcc < 1:556962/150‑1 (MQ=255) ggCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCaa > 1:538721/1‑150 (MQ=255) ggCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCATGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCaa > 2:1189936/1‑150 (MQ=255) ggCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCATGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCaa > 2:1190007/1‑150 (MQ=255) tGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAg < 1:709170/150‑1 (MQ=255) gATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCAt > 2:1081594/1‑150 (MQ=255) aTACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATg > 1:1183971/1‑150 (MQ=255) aTACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATg > 1:500927/1‑150 (MQ=255) gCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGt > 1:644072/1‑150 (MQ=255) cTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTc < 1:1001749/150‑1 (MQ=255) tCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGACCGGGGGTGAGCGCCTCGAGGCTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGTCAGCCCATGCAGTCg > 2:1067698/1‑150 (MQ=255) cGGCCACGGTAACGGTGGCGGCAGCCAGGCGGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGt < 2:365527/150‑1 (MQ=255) ccACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCa > 1:842473/1‑150 (MQ=255) gTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCg < 1:1054089/150‑1 (MQ=255) tGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCgg > 2:1248465/1‑150 (MQ=255) cAGCCAGGCTGGCAAAGGCATGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCgg < 1:1190007/150‑1 (MQ=255) cAGCCAGGCTGGCAAAGGCATGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCgg < 1:1189936/150‑1 (MQ=255) ggCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCAt < 2:644072/150‑1 (MQ=255) tGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCATTGa > 1:638573/1‑150 (MQ=255) ggCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATgg > 2:696861/1‑81 (MQ=255) ggCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATgg < 1:696861/81‑1 (MQ=255) aGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAATGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCATTGACCAAAc > 2:64925/1‑150 (MQ=255) cTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCATTGAc < 1:476371/141‑1 (MQ=255) cTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGCCATCGGGGGCATTGAc > 2:476371/1‑141 (MQ=255) | GGGCTCTGGCCAATCAGCTCTCTATCCTGGCCGCTGGCCTGGCGGTAGAGCTCGGCGCGATGGTGTTCGTCTTCGGCGCGCAGGGCCAGGTGCTCGATACGCTCGGCCACGGTAACGGTGGCGGCAGCCAGGCTGGCAAAGGCCTGCAGGGCATCCAGCTCCAGGCTCTGGAACTGCCCGGGGGTGAGGGCGTCGAGGGTGACCAGGCCCCATGGGCGCTCATCGACCATCAACGGGCAGCCCATGCAGTCGTGCACTTCAAGGTCGGCATCGGGGGCATTGACCAAAC > NC_002947/946779‑947067 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |