Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 955,155 | T→A | 16.0% | intergenic (+106/‑207) | cyoE → / → alaC | protoheme IX farnesyltransferase/aminotransferase |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 955,155 | 0 | T | A | 16.0% | 91.7 / 10.5 | 38 | intergenic (+106/‑207) | cyoE/alaC | protoheme IX farnesyltransferase/aminotransferase |
Reads supporting (aligned to +/- strand): ref base T (16/15); new base A (4/2); total (20/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.67e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.59e-01 |
AGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAG > NC_002947/955008‑955300 | aGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTc < 2:675926/150‑1 (MQ=255) ccAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑t < 2:344915/150‑1 (MQ=255) cGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGa < 2:1255662/150‑1 (MQ=255) gCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAg > 1:928619/1‑150 (MQ=255) tGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCAGCCCTTACAAGTGTCC‑TGTAGGAGCg < 2:1077948/150‑1 (MQ=255) gCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCgg < 2:402097/150‑1 (MQ=37) acgcTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGCCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGca < 1:728517/150‑1 (MQ=255) tgctgcCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGaa < 1:110693/130‑1 (MQ=255) tgctgcCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGaa > 2:110693/1‑130 (MQ=255) tCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGa < 2:928619/150‑1 (MQ=255) gAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGAACCT‑TGTAGGAGCGGGTTTACCCGCGAagag > 2:322341/1‑118 (MQ=18) gAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAC‑AGGAACCTTGTAGGAGCGGGTTTACCCGCGAagag < 1:322341/118‑1 (MQ=18) ccccGGCCACTGTGCCGGGG‑TTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCaaaaa > 2:21368/1‑150 (MQ=255) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATAc > 1:61104/1‑136 (MQ=255) cccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATAc < 2:61104/136‑1 (MQ=255) ccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGttt > 2:618885/1‑99 (MQ=255) ccGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGttt < 1:618885/99‑1 (MQ=255) tttGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATaaaa < 1:21368/150‑1 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAaga > 1:1005076/1‑70 (MQ=255) cTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAaga < 2:1005076/70‑1 (MQ=255) gCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCAt > 1:316430/1‑150 (MQ=255) ccgatctaCCCGCTAATACCAGGTTCC‑TGTAGAAACAGCGTGACGCACAAAGAGTCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCg < 2:1104124/143‑1 (MQ=255) gTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCa > 1:619345/1‑150 (MQ=255) aCCCGCTCCTACAGGAACCT‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGACATCCTGTTTCGGCACTAt > 2:465178/1‑150 (MQ=37) cccGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTGATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCggagatcgg > 1:1104124/1‑143 (MQ=255) cccGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtc > 2:686067/1‑150 (MQ=255) cccGCTCCTAC‑AGGAACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCt > 1:290003/1‑72 (MQ=11) ccGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATa < 1:1028908/86‑1 (MQ=255) ccGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATa > 2:1028908/1‑86 (MQ=255) ccGCTCCTAC‑AGGAACCTTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCgg > 2:877238/1‑142 (MQ=37) gCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACATGCATCCTGTTTCGGCACTAtcttc > 2:209338/1‑150 (MQ=255) gCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc > 2:221752/1‑150 (MQ=255) gCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTAtcttc < 2:316430/150‑1 (MQ=255) gCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGACAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGTCACTAtcttc > 1:731504/1‑150 (MQ=255) cTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTCATAAAACAGGAAATTATCGTTTACAGGCCTCCTGTTTCGGGACTAtcttcc > 1:56255/1‑149 (MQ=255) ccTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGa < 1:209338/150‑1 (MQ=255) aCAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTc > 1:1203226/1‑150 (MQ=255) aatgTTCC‑TGTATGGGCAGATTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTATCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAg < 2:56255/147‑1 (MQ=255) | AGCCAGACCGCTGCGGATGTGCTGATGACCTACGCACGCTGAAACTGCTGCCTGTTTCACGAAAACCCCGGCCACTGTGCCGGGGTTTTTTTTTGGGGGTATTTTTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAGGTTCC‑TGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGAAAAATAAAAATACCTGATTTTCAAAAAATAGATCTGAAAAGTTCTAATAAAACAGGAAATTATCCTTTACAGGCATCCTGTTTCGGCACTATCTTCTGATTCAG > NC_002947/955008‑955300 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |