| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,741,382 | G→A | 7.4% | N191N (AAC→AAT) | PP_1538 ← | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,741,382 | 0 | G | A | 7.4% | 151.8 / 3.1 | 54 | N191N (AAC→AAT) | PP_1538 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (24/26); new base A (2/2); total (26/28) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.53e-01 | |||||||||||
CAGACCCAGGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGAC > NC_002947/1741233‑1741523 | cagacccagGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCgg < 2:1245080/150‑1 (MQ=255) agacccagGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGt < 2:961778/150‑1 (MQ=255) ccagGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATCAACAGGGATAACGACAAGCTTCGAATGGAGCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTAt > 1:989288/1‑150 (MQ=255) cagGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTTAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATg > 2:283890/1‑150 (MQ=255) gTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCACGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTc < 1:414069/150‑1 (MQ=255) ggCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCggg < 1:596492/150‑1 (MQ=255) gCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGGTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTAAACCATCGCCGTGGTGAATGCGGTTTATGCCCTCgggg > 2:743279/1‑150 (MQ=255) tCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGt < 2:645908/150‑1 (MQ=255) gAGTCGGCCACGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAGTGGGTGGTAGTGGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCgg > 1:30495/1‑150 (MQ=255) cGGCCCCGCTGATCGCTACCCAGCGCTCGCGCCACGCGTGGAAGGGTCCGGCGCAGTTTACCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCttt < 2:67157/150‑1 (MQ=255) aTGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAAt > 2:296164/1‑145 (MQ=255) aTGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAAt < 1:296164/145‑1 (MQ=255) ggATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGtctc > 1:419289/1‑150 (MQ=255) tACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTctcgcc > 1:976651/1‑150 (MQ=255) aCCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTctcgccc < 1:1081037/150‑1 (MQ=255) cgcggggCTCGCGCCAAGCGTCGAAGAGATCGTCCCAGTGTCCCGGCCCGGGATCGCTCTTGAGTGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAGTCCGTctcgccct < 2:30495/144‑1 (MQ=255) ccAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGGATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCgg > 2:115947/1‑103 (MQ=255) ccAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGGATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCgg < 1:115947/103‑1 (MQ=255) agCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCa < 1:394827/150‑1 (MQ=255) gcgcCAAGCGTCGATCCTAGCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTg > 1:1008665/1‑150 (MQ=255) cgcCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGc < 2:153084/150‑1 (MQ=255) aaGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGgc < 2:419289/150‑1 (MQ=255) gCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc < 1:676925/116‑1 (MQ=255) gCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc > 2:676925/1‑116 (MQ=255) aaatggATCGGCCCTGTTTCCCGTTCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCTATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGac < 1:218910/146‑1 (MQ=255) aaGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGaca > 2:842762/1‑150 (MQ=255) gATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGAcacgca > 2:48891/1‑150 (MQ=255) cAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCCTGCCATCCTGCAGGCGCTCTACACGCACGTCGGTg < 1:743279/150‑1 (MQ=255) cGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCt > 2:1266583/1‑71 (MQ=255) cGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCt < 1:1266583/71‑1 (MQ=255) cGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCcag > 1:177908/1‑150 (MQ=255) cGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCcag > 2:630849/1‑150 (MQ=255) gCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc > 1:799425/1‑88 (MQ=255) gCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc < 2:799425/88‑1 (MQ=255) cAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGATTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGa > 2:801501/1‑150 (MQ=255) cAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGATTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGa > 2:801526/1‑150 (MQ=255) tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCggg < 2:1221915/61‑1 (MQ=255) tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCggg > 1:1221915/1‑61 (MQ=255) tctTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCCGGATTcggccgg > 2:518596/1‑150 (MQ=255) ttGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCAAAGAAGATTAggctggcc > 2:913461/1‑150 (MQ=255) tGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc > 1:515636/1‑69 (MQ=255) tGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTc < 2:515636/69‑1 (MQ=255) gtagtaGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCAt < 2:989288/150‑1 (MQ=255) gtagtaGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCAt < 1:1221073/150‑1 (MQ=255) agtagtGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCAtgt < 1:48891/150‑1 (MQ=255) gtgtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg < 2:760872/139‑1 (MQ=255) gtgtTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCgg > 1:760872/1‑139 (MQ=255) ttagCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATc > 2:601727/4‑60 (MQ=255) ttCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATc < 1:601727/60‑1 (MQ=255) ttCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCt > 2:1001778/1‑150 (MQ=255) cGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTgg < 1:510031/150‑1 (MQ=255) ccATCGCCGTGGTGAATGCGATTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGc < 1:801526/150‑1 (MQ=255) ccATCGCCGTGGTGAATGCGATTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGc < 1:801501/150‑1 (MQ=255) tCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTc < 2:976651/150‑1 (MQ=255) gtggtgAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGc > 2:263883/1‑150 (MQ=255) tgAATGCGGTTTATTCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGAc > 1:651732/1‑150 (MQ=255) tgAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGAc < 1:263883/150‑1 (MQ=255) | CAGACCCAGGGGTTGGCGTTCCAGGAGTCGGCCCCGTTGATGGATACCCAGAGCTCGCGCCAAGCGTCGAAGGGATCGGCCCAGTTTCCCGGCCCAGGATCGCTCTTGAATGGGTGGTAGTAGTGTTCGCCATCGCCGTGGTGAATGCGGTTTATGCCCTCGGGGACGTAGCGGCTTTCGAAATCCGTCTCGCCCTCGCCATCCTGCAGGCGCTCGACACGCACGTCGGTGACCTCCAGCAGGATTCGGCCGGCCACGCGGGGCATGTGGATGCTGGGCTTCCATGCTGAC > NC_002947/1741233‑1741523 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |