Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,928,591 | T→C | 6.5% | M515V (ATG→GTG) | PP_1728 ← | membrane protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,928,591 | 0 | T | C | 6.5% | 180.3 / 2.2 | 63 | M515V (ATG→GTG) | PP_1728 | membrane protein |
Reads supporting (aligned to +/- strand): ref base T (28/29); new base C (2/2); total (31/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.18e-01 |
TCCACATAGTCGTCGATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTG > NC_002947/1928452‑1928733 | tCCACATAGTCGTCGATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTg < 1:1169128/150‑1 (MQ=255) acaTAGTCGTCGATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGTTGACGTTCAGGCCCATGTTGGcc > 2:1231866/1‑150 (MQ=255) aGTCGTCGATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCAAGGCCGATCACACCGGCACCGGCCAGCAGTGCGGTGACGTTCATGCCCATGTTGGCCAggg < 1:997553/150‑1 (MQ=255) tcgtcgATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGcg > 2:149765/1‑150 (MQ=255) cgtcgATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGcga < 2:1172139/150‑1 (MQ=255) tGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGa < 2:1251898/150‑1 (MQ=255) aGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACcgcg < 1:469204/150‑1 (MQ=255) gCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCga > 1:1203642/1‑150 (MQ=255) cGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCgat < 2:988963/150‑1 (MQ=255) atgatgatgAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACAACCCCACCGGCAGCCTACGTTGTTGCGGTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATg > 1:988010/1‑150 (MQ=255) tgatgatgaACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATTACCGCGATGATGAAGATGa < 2:1076986/150‑1 (MQ=255) tgatgaACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACTCCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCa > 2:906717/1‑150 (MQ=255) aaCAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGACCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGACCATGTTGGCCAGGGCAACGATGACCGCGATGATGAAGATGACCACGAAc > 2:135209/1‑150 (MQ=255) cAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACAt > 1:108045/1‑150 (MQ=255) aGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATTCTATTGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATc < 1:732664/150‑1 (MQ=255) aGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAAGCAGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGAGCGACGATGACCGCGATGATGAAGATGACCACGAACATc > 2:633051/1‑150 (MQ=255) ggCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCa > 1:640993/1‑150 (MQ=255) gCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCAc < 2:1115458/150‑1 (MQ=255) cGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGt < 1:705504/150‑1 (MQ=255) ggTGATCAGGTCGGCCACCAGCGACTACGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGa < 1:267259/134‑1 (MQ=255) ggTGATCAGGTCGGCCACCAGCGACTACGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGa > 2:267259/1‑134 (MQ=255) tCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGaa < 2:1203642/150‑1 (MQ=255) cAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAAt < 2:640993/150‑1 (MQ=255) ggTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAAGTTACCACGAACATCACGTTGCGAATCa > 2:1126212/1‑150 (MQ=255) gCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAAc < 2:817059/147‑1 (MQ=255) gCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAAc > 1:817059/1‑147 (MQ=255) caccaGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCACGCCCAt < 1:523536/81‑1 (MQ=255) caccaGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCACGCCCAt > 2:523327/1‑81 (MQ=255) caccaGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCACGCCCAt > 2:523536/1‑81 (MQ=255) caccaGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCACGCCCAt < 1:523327/81‑1 (MQ=255) caGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGcatcat > 1:1152350/1‑150 (MQ=255) gCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATgg > 1:593147/1‑150 (MQ=255) aCTGCGCGCCAAAACCGATGGCCAGGCCGATCACCACGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGttt < 1:1231866/150‑1 (MQ=255) tGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTgc < 1:693441/150‑1 (MQ=255) gcgcCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTgc > 1:656706/1‑147 (MQ=255) gcgcCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTgc < 2:656706/147‑1 (MQ=255) cgcCAAAACCGATGGCCAGGCCGATCACTCCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCAc < 1:906717/150‑1 (MQ=255) gcCAAAACCGATGGCCAGGCCGATCACACCGGCACCGTCCAGCAGCGGGGTGACGTTCAt < 1:670533/60‑1 (MQ=255) gcCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCAt > 2:670533/1‑60 (MQ=255) aaaaCCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGc > 1:1139582/1‑150 (MQ=255) aaaaCCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGc < 2:988010/150‑1 (MQ=255) cGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGttcg > 2:110531/1‑148 (MQ=255) aTGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACgg > 1:22146/1‑122 (MQ=255) aTGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACgg < 2:22146/122‑1 (MQ=255) aTGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGcc > 2:762174/1‑150 (MQ=255) ccctcgacGACCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCAGGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGACCCAACGGCAGCATGGTTTGCGCACGGGCGTTGGCCAGc < 2:593147/143‑1 (MQ=255) cAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGccc > 1:827950/1‑150 (MQ=255) aGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGcccc > 2:696807/1‑150 (MQ=255) ggCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGccccc > 1:1271591/1‑150 (MQ=255) acacCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGAt > 1:1027654/1‑59 (MQ=255) acacCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGAt < 2:1027654/59‑1 (MQ=255) acacCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATTACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAg > 1:596770/1‑150 (MQ=255) accggcaccggcCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTg > 1:608609/1‑94 (MQ=255) accggcaccggcCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTg < 2:608609/94‑1 (MQ=255) gcaccggcCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCgatgat > 1:51959/1‑65 (MQ=255) gcaccggcCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCgatgat < 2:51959/65‑1 (MQ=255) accggcCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAg < 1:653172/150‑1 (MQ=255) gcagcGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGgt < 2:662803/150‑1 (MQ=255) gcGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCAt > 1:874999/1‑144 (MQ=255) gcGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCAt < 2:874999/144‑1 (MQ=255) cGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTAc < 2:1152350/150‑1 (MQ=255) gACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGgt < 1:149765/150‑1 (MQ=255) aCGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGAGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGgtg > 1:1029545/1‑150 (MQ=255) gTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGc > 2:251850/1‑132 (MQ=255) gTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGc < 1:251850/132‑1 (MQ=255) | TCCACATAGTCGTCGATGGCCAGCGAATCTTCGATGATGATGAACAGGCCGGTGATCAGGTCGGCCACCAGCGACTGCGCGCCAAAACCGATGGCCAGGCCGATCACACCGGCACCGGCCAGCAGCGGGGTGACGTTCATGCCCATGTTGGCCAGGGCGACGATGACCGCGATGATGAAGATGACCACGAACATCACGTTGCGAATCAACGGCATCATGGTTTGCGCACGGGCGTTGGCCAGCCCCCGGCGCGAGCGCACCAGGGCATGGTGTACGGCGGTG > NC_002947/1928452‑1928733 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |